7KDD
HCMV postfusion gB in complex with SM5-1 Fab
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8072742 | 3001498 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8072742 | 3001498 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8072742 | 3001498 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glycoprot_B_PH1 | e7kddA2 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Glycoprot_B_PH1 | ECOD (1.6) |
A | Glycoprot_B_PH2 | e7kddA3 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Glycoprot_B_PH2 | ECOD (1.6) |
A | Glycoprotein_B | e7kddA1 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Glycoprotein_B | ECOD (1.6) |
D [auth B] | Glycoprot_B_PH1 | e7kddB1 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Glycoprot_B_PH1 | ECOD (1.6) |
D [auth B] | Glycoprot_B_PH2 | e7kddB2 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Glycoprot_B_PH2 | ECOD (1.6) |
D [auth B] | Glycoprotein_B | e7kddB3 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Glycoprotein_B | ECOD (1.6) |
G [auth C] | Glycoprot_B_PH1 | e7kddC3 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Glycoprot_B_PH1 | ECOD (1.6) |
G [auth C] | Glycoprot_B_PH2 | e7kddC1 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Glycoprot_B_PH2 | ECOD (1.6) |
G [auth C] | Glycoprotein_B | e7kddC2 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Glycoprotein_B | ECOD (1.6) |
B [auth D] | V-set_8 | e7kddD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
E [auth F] | V-set_8 | e7kddF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
H | V-set_8 | e7kddH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth E] | V-set_3 | e7kddE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
F [auth G] | V-set_3 | e7kddG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
I | V-set_3 | e7kddI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth D], E [auth F], H | Heavy Chain | IGHV1 | - | envelope glycoprotein b | SAbDab (2024-08-16) |
C [auth E], F [auth G], I | Light Chain | IGLV1 | Lambda | envelope glycoprotein b | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B], G [auth C] | PF00606 | Herpesvirus Glycoprotein B ectodomain (Glycoprotein_B) | Herpesvirus Glycoprotein B ectodomain | This domain corresponds to the ectodomain of glycoprotein B according to ECOD. | Domain |
A, D [auth B], G [auth C] | PF17417 | Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2) | Herpesvirus Glycoprotein B PH-like domain | This domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. | Domain |
A, D [auth B], G [auth C] | PF17416 | Herpesvirus Glycoprotein B (Glycoprot_B_PH1) | Herpesvirus Glycoprotein B | This domain has a PH-like fold. | Domain |