7JOQ | pdb_00007joq

Structure of NV1 small terminase

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth jj]		e7joqjj1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
ZA [auth z]	UCR_14kD	e7joqz1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
Z	UCR_14kD	e7joqZ1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
YB [auth ii]	UCR_14kD	e7joqii1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
YA [auth y]		e7joqy1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
Y	UCR_14kD	e7joqY1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
XB [auth hh]	UCR_14kD	e7joqhh1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
XA [auth x]	UCR_14kD	e7joqx1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
X		e7joqX1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
WB [auth gg]		e7joqgg1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
WA [auth w]	UCR_14kD	e7joqw1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
W	UCR_14kD	e7joqW1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
VB [auth ff]	UCR_14kD	e7joqff1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
VA [auth v]		e7joqv1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
V	UCR_14kD	e7joqV1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
UB [auth ee]	UCR_14kD	e7joqee1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
UA [auth u]	UCR_14kD	e7joqu1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
U		e7joqU1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
TB [auth AJ]		e7joqAJ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
TA [auth t]	UCR_14kD	e7joqt1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
T	UCR_14kD	e7joqT1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
SB [auth AI]	UCR_14kD	e7joqAI1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
SA [auth s]		e7joqs1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
S	UCR_14kD	e7joqS1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
RB [auth AH]	UCR_14kD	e7joqAH1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
RA [auth r]	UCR_14kD	e7joqr1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
R		e7joqR1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
QB [auth AG]		e7joqAG1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
QA [auth q]	UCR_14kD	e7joqq1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
Q	UCR_14kD	e7joqQ1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
PB [auth AF]	UCR_14kD	e7joqAF1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
PA [auth p]		e7joqp1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
P	UCR_14kD	e7joqP1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
OB [auth AE]	UCR_14kD	e7joqAE1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
OA [auth o]	UCR_14kD	e7joqo1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
O		e7joqO1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
NB [auth AD]		e7joqAD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
NA [auth n]	UCR_14kD	e7joqn1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
N	UCR_14kD	e7joqN1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
MB [auth AC]	UCR_14kD	e7joqAC1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
MA [auth m]		e7joqm1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
M	UCR_14kD	e7joqM1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
LB [auth AB]	UCR_14kD	e7joqAB1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
LA [auth l]	UCR_14kD	e7joql1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
L		e7joqL1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
KB [auth AA]		e7joqAA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
KA [auth k]	UCR_14kD	e7joqk1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
K	UCR_14kD	e7joqK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
JB [auth 9]	UCR_14kD	e7joq91	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
JA [auth j]		e7joqj1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
J	UCR_14kD	e7joqJ1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
IB [auth 8]	UCR_14kD	e7joq81	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
IA [auth i]	UCR_14kD	e7joqi1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
I [auth H]		e7joqH1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
HB [auth 7]		e7joq71	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
HA [auth h]	UCR_14kD	e7joqh1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
H [auth G]		e7joqG1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
GB [auth 6]	UCR_14kD	e7joq61	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
GA [auth g]		e7joqg1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
G [auth F]	UCR_14kD	e7joqF1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
FB [auth 5]	UCR_14kD	e7joq51	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
FA [auth f]	UCR_14kD	e7joqf1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
F [auth E]		e7joqE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
EB [auth 4]		e7joq41	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
EA [auth e]	UCR_14kD	e7joqe1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
E [auth D]	UCR_14kD	e7joqD1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
DB [auth 3]	UCR_14kD	e7joq31	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
DA [auth d]		e7joqd1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
D [auth C]	UCR_14kD	e7joqC1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
CC [auth mm]		e7joqmm1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
CB [auth 2]	UCR_14kD	e7joq21	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
CA [auth c]	UCR_14kD	e7joqc1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
C [auth B]		e7joqB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
BC [auth ll]	UCR_14kD	e7joqll1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
BB [auth 1]		e7joq11	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
BA [auth b]	UCR_14kD	e7joqb1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
B [auth A]	UCR_14kD	e7joqA1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
AC [auth kk]	UCR_14kD	e7joqkk1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
AB [auth 0]	UCR_14kD	e7joq01	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)
AA [auth a]		e7joqa1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
A [auth I]	UCR_14kD	e7joqI1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth I], AA [auth a], AB [auth 0], AC [auth kk], B [auth A], A [auth I], AA [auth a], AB [auth 0], AC [auth kk], B [auth A], BA [auth b], BB [auth 1], BC [auth ll], C [auth B], CA [auth c], CB [auth 2], CC [auth mm], D [auth C], DA [auth d], DB [auth 3], E [auth D], EA [auth e], EB [auth 4], F [auth E], FA [auth f], FB [auth 5], G [auth F], GA [auth g], GB [auth 6], H [auth G], HA [auth h], HB [auth 7], I [auth H], IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth ee], V, VA [auth v], VB [auth ff], W, WA [auth w], WB [auth gg], X, XA [auth x], XB [auth hh], Y, YA [auth y], YB [auth ii], Z, ZA [auth z], ZB [auth jj]	PF20901	Bacteriophage Sf6, terminase small subunit-like (Sf6_terminase)	Bacteriophage Sf6, terminase small subunit-like	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth I], AA [auth a], AB [auth 0], AC [auth kk], B [auth A], A [auth I], AA [auth a], AB [auth 0], AC [auth kk], B [auth A], BA [auth b], BB [auth 1], BC [auth ll], C [auth B], CA [auth c], CB [auth 2], CC [auth mm], D [auth C], DA [auth d], DB [auth 3], E [auth D], EA [auth e], EB [auth 4], F [auth E], FA [auth f], FB [auth 5], G [auth F], GA [auth g], GB [auth 6], H [auth G], HA [auth h], HB [auth 7], I [auth H], IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth ee], V, VA [auth v], VB [auth ff], W, WA [auth w], WB [auth gg], X, XA [auth x], XB [auth hh], Y, YA [auth y], YB [auth ii], Z, ZA [auth z], ZB [auth jj]	IPR038713	Terminase small subunit, N-terminal DNA-binding domain, HTH motif superfamily	Homologous Superfamily
A [auth I], AA [auth a], AB [auth 0], AC [auth kk], B [auth A], A [auth I], AA [auth a], AB [auth 0], AC [auth kk], B [auth A], BA [auth b], BB [auth 1], BC [auth ll], C [auth B], CA [auth c], CB [auth 2], CC [auth mm], D [auth C], DA [auth d], DB [auth 3], E [auth D], EA [auth e], EB [auth 4], F [auth E], FA [auth f], FB [auth 5], G [auth F], GA [auth g], GB [auth 6], H [auth G], HA [auth h], HB [auth 7], I [auth H], IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth ee], V, VA [auth v], VB [auth ff], W, WA [auth w], WB [auth gg], X, XA [auth x], XB [auth hh], Y, YA [auth y], YB [auth ii], Z, ZA [auth z], ZB [auth jj]	IPR048683	Bacteriophage Sf6, terminase small subunit-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.