7JHZ
Crystal structure of the carbohydrate-binding domain VP8* of human P[8] rotavirus strain BM13851 in complex with LNDFH I
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d7jhza_ | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | automated matches | automated matches | (Human rotavirus A ) [TaxId: 10941 ], | SCOPe (2.08) |
B | d7jhzb_ | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | automated matches | automated matches | (Human rotavirus A ) [TaxId: 10941 ], | SCOPe (2.08) |
C | d7jhzc_ | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | automated matches | automated matches | (Human rotavirus A ) [TaxId: 10941 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8103943 | 3000120 | SCOP2B (2022-06-29) |
B | SCOP2 Family | vp4 sialic acid binding domain | 8103942 | 4002124 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8103943 | 3000120 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8103943 | 3000120 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00426 | e7jhzA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
B | PF00426 | e7jhzB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
C | PF00426 | e7jhzC1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00426 | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut) | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain | This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Outer capsid protein VP4 | - |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |