7FIX
Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth A1] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
AA [auth A3] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
N [auth A2] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
J [auth L1] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
JA [auth L3] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
W [auth L2] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
K [auth M1] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
KA [auth M3] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
X [auth M2] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
L [auth R1] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8034515 | 3000113 | SCOP2B (2022-06-29) |
LA [auth R3] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8034515 | 3000113 | SCOP2B (2022-06-29) |
Y [auth R2] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8034515 | 3000113 | SCOP2B (2022-06-29) |
M [auth X1] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
MA [auth X3] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
Z [auth X2] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
B [auth B1] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
BA [auth B3] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
O [auth B2] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
C [auth C1] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
CA [auth C3] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
P [auth C2] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
D [auth D1] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
DA [auth D3] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
Q [auth D2] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
E [auth E1] | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
EA [auth E3] | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
R [auth E2] | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
F [auth F1] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
FA [auth F3] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
S [auth F2] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
G [auth I1] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
GA [auth I3] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
T [auth I2] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
H [auth J1] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
HA [auth J3] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
U [auth J2] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
I [auth K1] | SCOP2B Superfamily | Photosystem I reaction center subunit X, PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
IA [auth K3] | SCOP2B Superfamily | Photosystem I reaction center subunit X, PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
V [auth K2] | SCOP2B Superfamily | Photosystem I reaction center subunit X, PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth A1] | PsaA_PsaB_C | e7fixA11 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
A [auth A1] | PsaA_PsaB_N | e7fixA12 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
AA [auth A3] | PsaA_PsaB_C | e7fixA31 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
AA [auth A3] | PsaA_PsaB_N | e7fixA32 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
N [auth A2] | PsaA_PsaB_C | e7fixA22 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
N [auth A2] | PsaA_PsaB_N | e7fixA21 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
J [auth L1] | PsaL | e7fixL11 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
JA [auth L3] | PsaL | e7fixL31 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
W [auth L2] | PsaL | e7fixL21 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
K [auth M1] | PsaM | e7fixM11 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
KA [auth M3] | PsaM | e7fixM31 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
X [auth M2] | PsaM | e7fixM21 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
L [auth R1] | Fer2 | e7fixR11 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2 | ECOD (1.6) |
LA [auth R3] | Fer2 | e7fixR31 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2 | ECOD (1.6) |
Y [auth R2] | Fer2 | e7fixR21 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2 | ECOD (1.6) |
M [auth X1] | PsaX | e7fixX11 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
MA [auth X3] | PsaX | e7fixX31 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
Z [auth X2] | PsaX | e7fixX21 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
B [auth B1] | PsaA_PsaB_C | e7fixB12 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
B [auth B1] | PsaA_PsaB_N | e7fixB11 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
BA [auth B3] | PsaA_PsaB_C | e7fixB32 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
BA [auth B3] | PsaA_PsaB_N | e7fixB31 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
O [auth B2] | PsaA_PsaB_C | e7fixB22 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
O [auth B2] | PsaA_PsaB_N | e7fixB21 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
C [auth C1] | Fer4_21_1 | e7fixC11 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
CA [auth C3] | Fer4_21_1 | e7fixC31 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
P [auth C2] | Fer4_21_1 | e7fixC21 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
D [auth D1] | PsaD | e7fixD11 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
DA [auth D3] | PsaD | e7fixD31 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
Q [auth D2] | PsaD | e7fixD21 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
E [auth E1] | PSI_PsaE | e7fixE11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
EA [auth E3] | PSI_PsaE | e7fixE31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
R [auth E2] | PSI_PsaE | e7fixE21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
F [auth F1] | PSI_PsaF | e7fixF11 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
FA [auth F3] | PSI_PsaF | e7fixF31 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
S [auth F2] | PSI_PsaF | e7fixF21 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
G [auth I1] | PSI_8 | e7fixI11 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
GA [auth I3] | PSI_8 | e7fixI31 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
T [auth I2] | PSI_8 | e7fixI21 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
H [auth J1] | PSI_PsaJ | e7fixJ11 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
HA [auth J3] | PSI_PsaJ | e7fixJ31 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
U [auth J2] | PSI_PsaJ | e7fixJ21 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
I [auth K1] | PSI_PSAK | e7fixK11 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
IA [auth K3] | PSI_PSAK | e7fixK31 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
V [auth K2] | PSI_PSAK | e7fixK21 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth A1], AA [auth A3], N [auth A2] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
J [auth L1], JA [auth L3], W [auth L2] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
K [auth M1], KA [auth M3], X [auth M2] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
L [auth R1], LA [auth R3], Y [auth R2] | PF00111 | 2Fe-2S iron-sulfur cluster binding domain (Fer2) | 2Fe-2S iron-sulfur cluster binding domain | - | Domain |
B [auth B1], BA [auth B3], O [auth B2] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
C [auth C1], CA [auth C3], P [auth C2] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
D [auth D1], DA [auth D3], Q [auth D2] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
E [auth E1], EA [auth E3], R [auth E2] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
F [auth F1], FA [auth F3], S [auth F2] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
G [auth I1], GA [auth I3], T [auth I2] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
H [auth J1], HA [auth J3], U [auth J2] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
I [auth K1], IA [auth K3], V [auth K2] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem I in the presence of ferredoxin and cytochrome c6 |