7F5S
human delta-METTL18 60S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F [auth LC] | SCOP2B Superfamily | Ribosomal protein L4 | 8052832 | 3001146 | SCOP2B (2022-06-29) |
F [auth LC] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052831 | 3002143 | SCOP2B (2022-06-29) |
G [auth LD] | SCOP2B Superfamily | Translational machinery components | 8052887 | 3000571 | SCOP2B (2022-06-29) |
H [auth LE] | SCOP2B Superfamily | Ribosomal protein L6e, N-terminal domain | 8053099 | 3002160 | SCOP2B (2022-06-29) |
H [auth LE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053100 | 3000334 | SCOP2B (2022-06-29) |
I [auth LF] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052923 | 3001378 | SCOP2B (2022-06-29) |
I [auth LF] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052922 | 3002152 | SCOP2B (2022-06-29) |
K [auth LH] | SCOP2B Superfamily | Ribosomal protein L6 | 8033688 | 3000724 | SCOP2B (2022-06-29) |
L [auth LI] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8035491 | 3000884 | SCOP2B (2022-06-29) |
M [auth LJ] | SCOP2B Superfamily | RL5-like | 8073892 | 3001709 | SCOP2B (2022-06-29) |
N [auth LL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053155 | 3002162 | SCOP2B (2022-06-29) |
P [auth LN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8098812 | 3000210 | SCOP2B (2022-06-29) |
R [auth LP] | SCOP2B Superfamily | Ribosomal protein L22 | 8076704 | 3001078 | SCOP2B (2022-06-29) |
S [auth LQ] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095977 | 3001045 | SCOP2B (2022-06-29) |
W [auth LU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053060 | 3002158 | SCOP2B (2022-06-29) |
X [auth LV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072050 | 3000433 | SCOP2B (2022-06-29) |
Z [auth LX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095967 | 3000210 | SCOP2B (2022-06-29) |
AA [auth LY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076756 | 3000334 | SCOP2B (2022-06-29) |
CA [auth La] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077123 | 3001045 | SCOP2B (2022-06-29) |
DA [auth Lb] | SCOP2B Superfamily | Ribosomal protein L29e | 8053036 | 3002157 | SCOP2B (2022-06-29) |
EA [auth Lc] | SCOP2B Superfamily | L30e-like | 8077491 | 3001739 | SCOP2B (2022-06-29) |
HA [auth Lf] | SCOP2B Superfamily | Translational proteins | 8087455 | 3000811 | SCOP2B (2022-06-29) |
NA [auth Ll] | SCOP2B Superfamily | Ribosomal protein L39e | 8095603 | 3001756 | SCOP2B (2022-06-29) |
RA [auth Lp] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101551 | 3001320 | SCOP2B (2022-06-29) |
B [auth LB] | SCOP2B Superfamily | Translational proteins | 8078351 | 3000811 | SCOP2B (2022-06-29) |
BA [auth LZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053050 | 3000334 | SCOP2B (2022-06-29) |
IA [auth Lg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053540 | 3002203 | SCOP2B (2022-06-29) |
KA [auth Li] | SCOP2B Superfamily | Ribosomal protein L36e | 8053120 | 3002161 | SCOP2B (2022-06-29) |
MA [auth Lk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053567 | 3002206 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth LA] | Ribosomal_L2_1 | e7f5sLA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
A [auth LA] | Ribosomal_L2_C_2 | e7f5sLA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
F [auth LC] | Ribosomal_L4 | e7f5sLC1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
F [auth LC] | Ribos_L4_asso_C | e7f5sLC2 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: Ribos_L4_asso_C | ECOD (1.6) |
G [auth LD] | Ribosomal_L5e | e7f5sLD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
H [auth LE] | Ribosomal_L6e | e7f5sLE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L6e | ECOD (1.6) |
I [auth LF] | Ribosomal_L30_1 | e7f5sLF1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
J [auth LG] | Ribosomal_L7Ae_1 | e7f5sLG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
K [auth LH] | Ribosomal_L6_2 | e7f5sLH2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
K [auth LH] | Ribosomal_L6 | e7f5sLH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
L [auth LI] | Ribosomal_L16 | e7f5sLI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
M [auth LJ] | Ribosomal_L5_C | e7f5sLJ1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
N [auth LL] | Ribosomal_L13e | e7f5sLL1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: Ribosomal_L13e | ECOD (1.6) |
O [auth LM] | Ribosomal_L14e | e7f5sLM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
P [auth LN] | Ribosomal_L15e | e7f5sLN1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
Q [auth LO] | Ribosomal_L13 | e7f5sLO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
R [auth LP] | Ribosomal_L22 | e7f5sLP1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
S [auth LQ] | Ribosomal_L18 | e7f5sLQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
T [auth LR] | Ribosomal_L19e_N | e7f5sLR2 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
T [auth LR] | Ribosomal_L19e_C | e7f5sLR1 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
W [auth LU] | Ribosomal_L22e | e7f5sLU1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: Ribosomal_L22e | ECOD (1.6) |
X [auth LV] | Ribosomal_L14 | e7f5sLV1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
Y [auth LW] | Ribosomal_L24e | e7f5sLW1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
Z [auth LX] | Ribosomal_L23_3 | e7f5sLX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_3 | ECOD (1.6) |
AA [auth LY] | Ribosomal_L26 | e7f5sLY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
CA [auth La] | Ribosomal_L18 | e7f5sLa1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
DA [auth Lb] | Ribosomal_L29e | e7f5sLb1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: Ribosomal_L29e | ECOD (1.6) |
EA [auth Lc] | Ribosomal_L7Ae | e7f5sLc1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
FA [auth Ld] | Ribosomal_L31e | e7f5sLd1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
HA [auth Lf] | Ribosomal_L35Ae | e7f5sLf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L35Ae | ECOD (1.6) |
JA [auth Lh] | Ribosomal_L29_2 | e7f5sLh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29_2 | ECOD (1.6) |
LA [auth Lj] | Ribosomal_L37e | e7f5sLj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
NA [auth Ll] | Ribosomal_L39 | e7f5sLl1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
PA [auth Ln] | Ribosomal_L41 | e7f5sLn1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: Ribosomal_L41 | ECOD (1.6) |
QA [auth Lo] | Ribosomal_L44 | e7f5sLo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
RA [auth Lp] | Ribosomal_L37ae | e7f5sLp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
SA [auth Lr] | Ribosomal_L28e | e7f5sLr1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: Ribosomal_L28e | ECOD (1.6) |
B [auth LB] | Ribosomal_L3 | e7f5sLB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
U [auth LS] | Ribosomal_L18A | e7f5sLS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
V [auth LT] | Ribosomal_L21e | e7f5sLT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
BA [auth LZ] | Ribosomal_L27e | e7f5sLZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L27e | ECOD (1.6) |
GA [auth Le] | Ribosomal_L32e | e7f5sLe1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
IA [auth Lg] | Ribosomal_L34e | e7f5sLg1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
KA [auth Li] | Ribosomal_L36e | e7f5sLi1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: Ribosomal_L36e | ECOD (1.6) |
MA [auth Lk] | Ribosomal_L38e | e7f5sLk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: Ribosomal_L38e | ECOD (1.6) |
OA [auth Lm] | Ribosomal_L40e | e7f5sLm1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L40e | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
E [auth L8] | OMU | Parent Component: U |
F [auth LC] | MLZ | Parent Component: LYS :  AA0076 :  N6-methyl-L-lysine MOD:00085 |
C [auth L5] | 1MA | Parent Component: A :  AA0076 |
C [auth L5] | 2MG | Parent Component: G :  AA0076 |
C [auth L5] | 5MC | Parent Component: C :  AA0076 |
C [auth L5] | 5MU | Parent Component: U :  AA0076 |
C [auth L5] | 6MZ | Parent Component: A :  AA0076 |
C [auth L5] | A2M | Parent Component: A :  AA0076 |
C [auth L5] | B8T | Parent Component: C :  AA0076 |
C [auth L5] | JMH | Parent Component: C |
C [auth L5] | OMC | Parent Component: C :  AA0076 |
C [auth L5] | OMG | Parent Component: G :  AA0076 |
C [auth L5] | OMU | Parent Component: U :  AA0076 |
C [auth L5] | PSU | Parent Component: U :  AA0076 |
C [auth L5] | UR3 | Parent Component: U :  AA0076 |
C [auth L5] | UY1 | AA0076 | : 
OA [auth Lm] | MLZ | Parent Component: LYS :  AA0076 , AA0076 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 |