7F56
DNQX-bound GluK2-1xNeto2 complex, with asymmetric LBD
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Type 2 solute binding protein-like | 8032346 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF00060 | e7f56B3 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
B | PF01094 | e7f56B5 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: PF01094 | ECOD (1.6) |
B | F_UNCLASSIFIED | e7f56B2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF10613 | e7f56B1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
A | PF00060 | e7f56A1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
A | PF01094 | e7f56A5 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: PF01094 | ECOD (1.6) |
A | F_UNCLASSIFIED | e7f56A3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF10613 | e7f56A2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
C | PF00060 | e7f56C2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
C | PF01094 | e7f56C1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: PF01094 | ECOD (1.6) |
C | F_UNCLASSIFIED | e7f56C3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF10613 | e7f56C5 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
D | PF00060 | e7f56D2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
D | PF01094 | e7f56D5 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: PF01094 | ECOD (1.6) |
D | F_UNCLASSIFIED | e7f56D3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF10613 | e7f56D1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family | |
PF01094 | Receptor family ligand binding region (ANF_receptor) | Receptor family ligand binding region | - | Family | |
PF10613 | Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd) | Ligated ion channel L-glutamate- and glycine-binding site | This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ... | Domain | |
PF00431 | CUB domain (CUB) | CUB domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028082 | Periplasmic binding protein-like I | Homologous Superfamily | |
IPR001508 | Ionotropic glutamate receptor, metazoa | Family | |
IPR001828 | Receptor, ligand binding region | Domain | |
IPR001320 | Ionotropic glutamate receptor, C-terminal | Domain | |
IPR019594 | Ionotropic glutamate receptor, L-glutamate and glycine-binding domain | Domain | |
IPR015683 | Ionotropic glutamate receptor | Family | |
IPR050841 | Developmental metalloproteases and endocytic receptors | Family | |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | Repeat | |
IPR035914 | Spermadhesin, CUB domain superfamily | Homologous Superfamily | |
IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | Conserved Site | |
IPR036055 | LDL receptor-like superfamily | Homologous Superfamily | |
IPR000859 | CUB domain | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Glutamate-gated Ion Channel (GIC) family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Other Ion Channels | GluK2 Glutamate receptor in complex with NETO2, desensitized state |