Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068016 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARhv_5e7ebzA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
B [auth C]Rhv_3e7ebzC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)
C [auth B]Rhv_1e7ebzB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
DPico_P1A_C,Pico_P1A_Ne7ebzD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Pico_P1A_C,Pico_P1A_NECOD (1.6)
EV-set_8e7ebzE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
FV-sete7ebzF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Heavy ChainIGHV1 -capsid protein vp2 | capsid protein vp1 | capsid protein vp3SAbDab (2024-10-25)
Light ChainIGKV9 Kappacapsid protein vp2 | capsid protein vp1 | capsid protein vp3SAbDab (2024-10-25)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22663Picornavirus coat protein (Rhv_5)Picornavirus coat proteinThis domain is found in capsid proteins from picornavirus, such as enterovirus, rhinovirus and foot-and-mouth disease virus [1-5].Domain
B [auth C]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1
B [auth C]Capsid protein VP3
C [auth B]Capsid protein VP2
Capsid protein VP4
Fab 2H12 heavy chain---
Fab 2H12 light chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth C]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth C]IPR002527Picornavirus 2B proteinDomain
B [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth C]IPR003593AAA+ ATPase domainDomain
B [auth C]IPR003138Picornavirus coat protein VP4Family
B [auth C]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth C]IPR001676Picornavirus capsidDomain
B [auth C]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth C]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth C]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth C]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth C]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth C]IPR014838Poliovirus 3A protein-likeDomain
B [auth C]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth C]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth C]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth C]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth B]IPR002527Picornavirus 2B proteinDomain
C [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth B]IPR003593AAA+ ATPase domainDomain
C [auth B]IPR003138Picornavirus coat protein VP4Family
C [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth B]IPR001676Picornavirus capsidDomain
C [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth B]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth B]IPR014838Poliovirus 3A protein-likeDomain
C [auth B]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth B]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR003138Picornavirus coat protein VP4Family
IPR001676Picornavirus capsidDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily