Annotations: 7DD9

Cryo-EM structure of the Ams1 and Nbr1 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth G]	MIF4G	e7dd9G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
C [auth E]	MIF4G	e7dd9E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
B [auth C]	MIF4G	e7dd9C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
A		e7dd9A01	A: beta barrels	X: Histone-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F:	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth G]	3.20.110.10	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel	Glycoside hydrolase 38, N terminal domain	CATH (utative)
D [auth G]	2.70.98.30	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (utative)
C [auth E]	3.20.110.10	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel	Glycoside hydrolase 38, N terminal domain	CATH (utative)
C [auth E]	2.70.98.30	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (utative)
B [auth C]	3.20.110.10	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel	Glycoside hydrolase 38, N terminal domain	CATH (utative)
B [auth C]	2.70.98.30	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (utative)
A	3.20.110.10	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel	Glycoside hydrolase 38, N terminal domain	CATH (utative)
A	2.70.98.30	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G]	PF01074	Glycosyl hydrolases family 38 N-terminal domain (Glyco_hydro_38N)	Glycosyl hydrolases family 38 N-terminal domain	Glycosyl hydrolases are key enzymes of carbohydrate metabolism.	Domain
A, B [auth C], C [auth E], D [auth G]	PF22907	Alpha-mannosidase, jelly roll domain (Ams1-like_1st)	Alpha-mannosidase, jelly roll domain	This domain is found at the N-terminal end of Alpha-mannosidase 2C1 from Schizosaccharomyces pombe (Ams1) and similar sequences mainly from eukaryota and some species from actinomycetes. Ams1 hydrolyse terminal alpha-linked mannoses in free oligosacc ...	This domain is found at the N-terminal end of Alpha-mannosidase 2C1 from Schizosaccharomyces pombe (Ams1) and similar sequences mainly from eukaryota and some species from actinomycetes. Ams1 hydrolyse terminal alpha-linked mannoses in free oligosaccharides released from misfolded glycoproteins or lipid-linked oligosaccharide donors. This entry represents the jelly-roll domain [2].	Domain
A, B [auth C], C [auth E], D [auth G]	PF17677	Glycosyl hydrolases family 38 C-terminal beta sandwich domain (Glyco_hydro38C2)	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	This domain is found at the C-terminal end of various glycosyl hydrolases belonging to family 38. The domain has a beta sandwich fold.	Domain
A, B [auth C], C [auth E], D [auth G]	PF09261	Alpha mannosidase middle domain (Alpha-mann_mid)	Alpha mannosidase middle domain	Members of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase [1].	Domain
A, B [auth C], C [auth E], D [auth G]	PF07748	Glycosyl hydrolases family 38 C-terminal domain (Glyco_hydro_38C)	Glycosyl hydrolases family 38 C-terminal domain	Glycosyl hydrolases are key enzymes of carbohydrate metabolism.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E], D [auth G]	Alpha-mannosidase,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein	transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding cargo receptor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding cargo receptor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding mannosyl-oligosaccharide 1,3-alpha-mannosidase activity mannosyl-oligosaccharide mannosidase activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds mannosidase activity hydrolase activity alpha-mannosidase activity catalytic activity mannosyl-oligosaccharide 1,6-alpha-mannosidase activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility locomotion localization transport carbohydrate transport oligosaccharide transport disaccharide transport establishment of localization maltose transport polysaccharide localization dextrin transport macromolecule localization maltodextrin transmembrane transport polysaccharide transport response to disaccharide response to oxygen-containing compound detection of maltose stimulus detection of stimulus response to carbohydrate detection of chemical stimulus detection of disaccharide stimulus response to maltose detection of carbohydrate stimulus establishment of protein localization cellular localization protein targeting establishment of protein localization to vacuole intracellular transport protein localization to vacuole establishment of protein localization to organelle protein transport establishment of localization in cell protein localization to organelle vacuolar transport intracellular protein localization cytoplasm to vacuole targeting by the NVT pathway protein targeting to vacuole intracellular protein transport monosaccharide metabolic process carbohydrate metabolic process mannose metabolic process hexose metabolic process small molecule metabolic process metabolic process primary metabolic process catabolic process oligosaccharide catabolic process oligosaccharide metabolic process carbohydrate catabolic process	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex extracellular region ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex extracellular region periplasmic space outer membrane-bounded periplasmic space cell envelope membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system endosome intracellular vesicle cytoplasmic vesicle late endosome multivesicular body vesicle NVT complex storage vacuole lytic vacuole membrane-enclosed lumen vacuolar lumen vacuole intracellular organelle lumen fungal-type vacuole organelle lumen fungal-type vacuole lumen vacuolar membrane lytic vacuole membrane bounding membrane of organelle organelle membrane fungal-type vacuole membrane cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E], D [auth G]	IPR006061	Solute-binding family 1, conserved site	Conserved Site
A, B [auth C], C [auth E], D [auth G]	IPR006060	Maltose/Cyclodextrin ABC transporter, substrate-binding protein	Family
A, B [auth C], C [auth E], D [auth G]	IPR006059	Bacterial-type extracellular solute-binding protein	Family
A, B [auth C], C [auth E], D [auth G]	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR000433	Zinc finger, ZZ-type	Domain
A, B [auth C], C [auth E], D [auth G]	IPR032350	Nbr1, FW domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR028995	Glycoside hydrolase families 57/38, central domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR015341	Glycoside hydrolase family 38, central domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR054723	Alpha-mannosidase Ams1-like, N-terminal	Domain
A, B [auth C], C [auth E], D [auth G]	IPR011682	Glycosyl hydrolase family 38, C-terminal	Domain
A, B [auth C], C [auth E], D [auth G]	IPR041147	Glycosyl hydrolases family 38, C-terminal domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR000602	Glycoside hydrolase family 38, N-terminal domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR027291	Glycoside hydrolase 38, N-terminal domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR037094	Glycoside hydrolase family 38, central domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.