7DD9

Cryo-EM structure of the Ams1 and Nbr1 complex


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B [auth C],
C [auth E],
D [auth G]
PF01074Glycosyl hydrolases family 38 N-terminal domain (Glyco_hydro_38N)Glycosyl hydrolases family 38 N-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism.Domain
A,
B [auth C],
C [auth E],
D [auth G]
PF22907Alpha-mannosidase, jelly roll domain (Ams1-like_1st)Alpha-mannosidase, jelly roll domainThis domain is found at the N-terminal end of Alpha-mannosidase 2C1 from Schizosaccharomyces pombe (Ams1) and similar sequences mainly from eukaryota and some species from actinomycetes. Ams1 hydrolyse terminal alpha-linked mannoses in free oligosacc ...This domain is found at the N-terminal end of Alpha-mannosidase 2C1 from Schizosaccharomyces pombe (Ams1) and similar sequences mainly from eukaryota and some species from actinomycetes. Ams1 hydrolyse terminal alpha-linked mannoses in free oligosaccharides released from misfolded glycoproteins or lipid-linked oligosaccharide donors. This entry represents the jelly-roll domain [2].
Domain
A,
B [auth C],
C [auth E],
D [auth G]
PF17677Glycosyl hydrolases family 38 C-terminal beta sandwich domain (Glyco_hydro38C2)Glycosyl hydrolases family 38 C-terminal beta sandwich domainThis domain is found at the C-terminal end of various glycosyl hydrolases belonging to family 38. The domain has a beta sandwich fold.Domain
A,
B [auth C],
C [auth E],
D [auth G]
PF09261Alpha mannosidase middle domain (Alpha-mann_mid)Alpha mannosidase middle domainMembers of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase [1].Domain
A,
B [auth C],
C [auth E],
D [auth G]
PF07748Glycosyl hydrolases family 38 C-terminal domain (Glyco_hydro_38C)Glycosyl hydrolases family 38 C-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B [auth C],
C [auth E],
D [auth G]
Alpha-mannosidase,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B [auth C],
C [auth E],
D [auth G]
IPR028995Glycoside hydrolase families 57/38, central domain superfamilyHomologous Superfamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR015341Glycoside hydrolase family 38, central domainDomain
A,
B [auth C],
C [auth E],
D [auth G]
IPR041147Glycosyl hydrolases family 38, C-terminal beta sandwich domainDomain
A,
B [auth C],
C [auth E],
D [auth G]
IPR011330Glycoside hydrolase/deacetylase, beta/alpha-barrelHomologous Superfamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR011682Glycosyl hydrolase family 38, C-terminalDomain
A,
B [auth C],
C [auth E],
D [auth G]
IPR000602Glycoside hydrolase family 38, N-terminal domainDomain
A,
B [auth C],
C [auth E],
D [auth G]
IPR027291Glycoside hydrolase 38, N-terminal domain superfamilyHomologous Superfamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR011013Galactose mutarotase-like domain superfamilyHomologous Superfamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR037094Glycoside hydrolase family 38, central domain superfamilyHomologous Superfamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR006061Solute-binding family 1, conserved siteConserved Site
A,
B [auth C],
C [auth E],
D [auth G]
IPR006060Maltose/Cyclodextrin ABC transporter, substrate-binding proteinFamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR006059Bacterial-type extracellular solute-binding proteinFamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR043145Zinc finger, ZZ-type superfamilyHomologous Superfamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR032350Next to BRCA1, central domainDomain
A,
B [auth C],
C [auth E],
D [auth G]
IPR013783Immunoglobulin-like foldHomologous Superfamily
A,
B [auth C],
C [auth E],
D [auth G]
IPR000433Zinc finger, ZZ-typeDomain