7CW3

Cryo-EM structure of Chikungunya virus in complex with mAb CHK-263 IgG (subregion around icosahedral 2-fold vertex)

External Resource: Annotation

Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01589	e7cw3A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
A	PF01589	e7cw3A3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
A	PF01589	e7cw3A1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
BA [auth Y]	PF01589	e7cw3Y3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
BA [auth Y]	PF01589	e7cw3Y1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
BA [auth Y]	PF01589	e7cw3Y2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
C	PF01589	e7cw3C2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
C	PF01589	e7cw3C1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
C	PF01589	e7cw3C3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
DA [auth S]	PF01589	e7cw3S2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
DA [auth S]	PF01589	e7cw3S1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
DA [auth S]	PF01589	e7cw3S3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
E [auth G]	PF01589	e7cw3G2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
E [auth G]	PF01589	e7cw3G1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
E [auth G]	PF01589	e7cw3G3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
G [auth E]	PF01589	e7cw3E2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
G [auth E]	PF01589	e7cw3E1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
G [auth E]	PF01589	e7cw3E3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
HA [auth c]	PF01589	e7cw3c3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
HA [auth c]	PF01589	e7cw3c2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
HA [auth c]	PF01589	e7cw3c1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
JA [auth a]	PF01589	e7cw3a1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
JA [auth a]	PF01589	e7cw3a2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
JA [auth a]	PF01589	e7cw3a3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
K	PF01589	e7cw3K3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
K	PF01589	e7cw3K2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
K	PF01589	e7cw3K1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
LA [auth Q]	PF01589	e7cw3Q2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
LA [auth Q]	PF01589	e7cw3Q3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
LA [auth Q]	PF01589	e7cw3Q1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
M [auth I]	PF01589	e7cw3I2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
M [auth I]	PF01589	e7cw3I3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
M [auth I]	PF01589	e7cw3I1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
NA [auth O]	PF01589	e7cw3O1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
NA [auth O]	PF01589	e7cw3O3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
NA [auth O]	PF01589	e7cw3O2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
O [auth i]	PF01589	e7cw3i3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
O [auth i]	PF01589	e7cw3i2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
O [auth i]	PF01589	e7cw3i1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
PA [auth M]	PF01589	e7cw3M1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
PA [auth M]	PF01589	e7cw3M3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
PA [auth M]	PF01589	e7cw3M2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
Q [auth g]	PF01589	e7cw3g2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
Q [auth g]	PF01589	e7cw3g1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
Q [auth g]	PF01589	e7cw3g3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
S [auth e]	PF01589	e7cw3e3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
S [auth e]	PF01589	e7cw3e1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
S [auth e]	PF01589	e7cw3e2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
X [auth W]	PF01589	e7cw3W1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
X [auth W]	PF01589	e7cw3W2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
X [auth W]	PF01589	e7cw3W3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
Z [auth U]	PF01589	e7cw3U2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
Z [auth U]	PF01589	e7cw3U1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
Z [auth U]	PF01589	e7cw3U3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
FA [auth m]	PF07654	e7cw3m1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
FA [auth m]	PF07686	e7cw3m2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
I [auth q]	PF07654	e7cw3q1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
I [auth q]	PF07686	e7cw3q2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
SA [auth o]	PF07654	e7cw3o2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
SA [auth o]	PF07686	e7cw3o1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
V [auth k]	PF07654	e7cw3k1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
V [auth k]	PF07686	e7cw3k2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
GA [auth n]	PF07654	e7cw3n2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
GA [auth n]	PF07686	e7cw3n1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
J [auth r]	PF07654	e7cw3r2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
J [auth r]	PF07686	e7cw3r1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
TA [auth p]	PF07654	e7cw3p2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
TA [auth p]	PF07686	e7cw3p1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
W [auth l]	PF07654	e7cw3l1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
W [auth l]	PF07686	e7cw3l2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
RA [auth t]	PF00944	e7cw3t1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
U [auth s]	PF00944	e7cw3s1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
FA [auth m], I [auth q], SA [auth o], V [auth k]	mAb CHK-263	VH-CH1	Mus musculus (house mouse)	IGHV1-8001, IGHJ201, IGHG2C01, IGHG2C02, IGHG2C*03	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202428-2)
GA [auth n], J [auth r], TA [auth p], W [auth l]	mAb CHK-263	L-KAPPA	Mus musculus (house mouse)	IGKV5-4301, IGKJ201, IGKC01, IGKC02	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202428-2)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
FA [auth m], I [auth q], SA [auth o], V [auth k]	Heavy Chain	IGHV1	-	e2 glycoprotein \| e1 glycoprotein, unknown \| unknown, capsid protein \| capsid protein, fab light chain \| fab heavy chain	SAbDab (2024-07-12)
GA [auth n], J [auth r], TA [auth p], W [auth l]	Light Chain	IGKV5	Kappa	e2 glycoprotein \| e1 glycoprotein, unknown \| unknown, capsid protein \| capsid protein, fab light chain \| fab heavy chain	SAbDab (2024-07-12)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	PF00944	Alphavirus core protein (Peptidase_S3)	Alphavirus core protein	Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	PF01589	Alphavirus E1 glycoprotein (Alpha_E1_glycop)	Alphavirus E1 glycoprotein	-	Family
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	PF00943	Alphavirus E2 glycoprotein (Alpha_E2_glycop)	Alphavirus E2 glycoprotein	-	Family
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	PF00944	Alphavirus core protein (Peptidase_S3)	Alphavirus core protein	Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	E1 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response response to host response to external biotic stimulus symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response response to host defenses response to other organism symbiont-mediated perturbation of host immune response response to defenses of other organism symbiont-mediated perturbation of host defenses response to external stimulus symbiont-mediated suppression of host signal transduction pathway modulation by symbiont of host process symbiont-mediated suppression of host toll-like receptor signaling pathway cellular process virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle
FA [auth m], I [auth q], SA [auth o], V [auth k]	Fab heavy chain	-	-	-
GA [auth n], J [auth r], TA [auth p], W [auth l]	Fab light chain	-	-	-
RA [auth t], U [auth s]	Capsid protein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response response to host response to external biotic stimulus symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response response to host defenses response to other organism symbiont-mediated perturbation of host immune response response to defenses of other organism symbiont-mediated perturbation of host defenses response to external stimulus symbiont-mediated suppression of host signal transduction pathway modulation by symbiont of host process symbiont-mediated suppression of host toll-like receptor signaling pathway cellular process virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	E2 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response response to host response to external biotic stimulus symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response response to host defenses response to other organism symbiont-mediated perturbation of host immune response response to defenses of other organism symbiont-mediated perturbation of host defenses response to external stimulus symbiont-mediated suppression of host signal transduction pathway modulation by symbiont of host process symbiont-mediated suppression of host toll-like receptor signaling pathway cellular process virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR000936	Alphavirus E2 glycoprotein	Family
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR000930	Peptidase S3, togavirin	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR002548	Alphavirus E1 glycoprotein	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
RA [auth t], U [auth s]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
RA [auth t], U [auth s]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
RA [auth t], U [auth s]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
RA [auth t], U [auth s]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
RA [auth t], U [auth s]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
RA [auth t], U [auth s]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
RA [auth t], U [auth s]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
RA [auth t], U [auth s]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
RA [auth t], U [auth s]	IPR000936	Alphavirus E2 glycoprotein	Family
RA [auth t], U [auth s]	IPR000930	Peptidase S3, togavirin	Domain
RA [auth t], U [auth s]	IPR002548	Alphavirus E1 glycoprotein	Domain
RA [auth t], U [auth s]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
RA [auth t], U [auth s]	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR000936	Alphavirus E2 glycoprotein	Family
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR000930	Peptidase S3, togavirin	Domain
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR002548	Alphavirus E1 glycoprotein	Domain
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily