7BYF
The crystal structure of mouse ORF10-Rae1-Nup98 complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ANAPC4_WD40_4 | e7byfA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
E [auth D] | ANAPC4_WD40_4 | e7byfD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
B | KOG0845 | e7byfB1 | A: extended segments | X: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | H: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | T: Gle2-binding sequence (GLEBS) of Nup98 | F: KOG0845 | ECOD (1.6) |
F [auth E] | KOG0845 | e7byfE1 | A: extended segments | X: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | H: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | T: Gle2-binding sequence (GLEBS) of Nup98 | F: KOG0845 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E [auth D] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
B, F [auth E] | PF21240 | Nup98, Gle2-binding sequence (Nup98_GLEBS) | Nup98, Gle2-binding sequence | This is the Gle2-binding sequence (GLEBS) of Nup98, which forms a hairpin that binds with its C-terminal arm to an essentially invariant hydrophobic surface that extends over the top face of the Rae1 beta-propeller [1]. This interaction is required f ... | Domain |
C [auth F], D [auth C] | PF04797 | Herpesvirus dUTPase protein (Herpes_ORF11) | Herpesvirus dUTPase protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, E [auth D] | IPR019775 | WD40 repeat, conserved site | Conserved Site |
A, E [auth D] | IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
A, E [auth D] | IPR001680 | WD40 repeat | Repeat |
A, E [auth D] | IPR020472 | G-protein beta WD-40 repeat | Repeat |
A, E [auth D] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
B, F [auth E] | IPR037665 | Nucleoporin peptidase S59-like | Family |
B, F [auth E] | IPR036903 | Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily | Homologous Superfamily |
B, F [auth E] | IPR007230 | Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain | Domain |
B, F [auth E] | IPR021967 | Nuclear pore complex protein NUP96, C-terminal domain | Domain |
C [auth F], D [auth C] | IPR006882 | Herpesvirus Orf11 | Family |