7BT6

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2021-05-27)
CSCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2021-05-27)
CSCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2021-05-27)
DSCOP2B SuperfamilyTranslational machinery components 8052875 3000571 SCOP2B (2021-05-27)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2021-05-27)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2021-05-27)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke 8052916 3002152 SCOP2B (2021-05-27)
GSCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2021-05-27)
I [auth J]SCOP2B SuperfamilyRL5-like 8073884 3001709 SCOP2B (2021-05-27)
J [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2021-05-27)
L [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8082481 3000210 SCOP2B (2021-05-27)
M [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2021-05-27)
N [auth P]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2021-05-27)
O [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2021-05-27)
P [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2021-05-27)
S [auth U]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2021-05-27)
T [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8102130 3000433 SCOP2B (2021-05-27)
V [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8095962 3000210 SCOP2B (2021-05-27)
W [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2021-05-27)
X [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2021-05-27)
AA [auth c]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2021-05-27)
DA [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2021-05-27)
GA [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2021-05-27)
HA [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2021-05-27)
IA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2021-05-27)
KA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2021-05-27)
NA [auth v]SCOP2B SuperfamilyClass II aaRS ABD-related 8092352 3000465 SCOP2B (2021-05-27)
NA [auth v]SCOP2B SuperfamilyClass II aaRS ABD-related 8092351 3000465 SCOP2B (2021-05-27)
OA [auth w]SCOP2B SuperfamilyRrs1-like 8092359 3002595 SCOP2B (2021-05-27)
QA [auth y]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2021-05-27)
EA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00181e7bt6A1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
APF03947e7bt6A2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
BPF00297e7bt6B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
CPF00573e7bt6C2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
CPF14374e7bt6C1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
DPF14204,PF17144e7bt6D1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
EPF01159e7bt6E1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
FPF00327,PF08079e7bt6F1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
GPF01248e7bt6G1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
HPF00347e7bt6H2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
I [auth J]PF00281,PF00673e7bt6J1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
J [auth L]PF01294e7bt6L1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
K [auth M]PF00467,PF01929e7bt6M1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
L [auth N]PF00827e7bt6N1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
M [auth O]PF00572e7bt6O1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
N [auth P]PF00237e7bt6P1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
O [auth Q]PF17135e7bt6Q1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
P [auth R]PF01280e7bt6R1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
P [auth R]PF01280e7bt6R2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
Q [auth S]F_UNCLASSIFIEDe7bt6S2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
Q [auth S]PF01775e7bt6S1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
R [auth T]PF01157e7bt6T1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
S [auth U]PF01776e7bt6U1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
T [auth V]PF00238e7bt6V1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
U [auth W]PF00466e7bt6W2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
U [auth W]PF17777e7bt6W1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
V [auth X]PF00276e7bt6X1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
W [auth Y]PF16906e7bt6Y1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
X [auth Z]PF01777e7bt6Z1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
Y [auth a]PF00828e7bt6a1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
AA [auth c]PF01248e7bt6c1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
BA [auth d]PF01198e7bt6d1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
CA [auth e]PF01655e7bt6e1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
DA [auth f]PF01247e7bt6f1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
FA [auth h]PF00831e7bt6h1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
GA [auth i]PF01158e7bt6i1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
HA [auth j]PF01907e7bt6j1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
IA [auth k]PF01781e7bt6k1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
KA [auth p]PF01780e7bt6p1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
PA [auth x]PF00400e7bt6x1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
PA [auth x]PF08154e7bt6x2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF08154ECOD (1.6)
QA [auth y]PF01912e7bt6y1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
EA [auth g]PF01199e7bt6g1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
I [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
I [auth J]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
I [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth M]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1].Domain
K [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
K [auth M]PF00467KOW motif (KOW)KOW motif- Family
L [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
M [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
N [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
N [auth P]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
P [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
P [auth R]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
Q [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
S [auth U]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
S [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
T [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
T [auth V]PF04427Brix domain (Brix)Brix domain- Domain
U [auth W]PF04939Ribosome biogenesis regulatory protein (RRS1) (RRS1)Ribosome biogenesis regulatory protein (RRS1)- Family
U [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
U [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
V [auth X]PF08154NLE (NUC135) domain (NLE)NLE (NUC135) domainThis domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1].Domain
V [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
V [auth X]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth Y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
W [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
W [auth Y]PF00467KOW motif (KOW)KOW motif- Family
X [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L2-A
60S ribosomal protein L3
60S ribosomal protein L4-A
60S ribosomal protein L5
60S ribosomal protein L6-A
60S ribosomal protein L7-A
60S ribosomal protein L8-A
60S ribosomal protein L9-A
I [auth J]60S ribosomal protein L11-A
J [auth L]60S ribosomal protein L13-A
K [auth M]60S ribosomal protein L14-A
L [auth N]60S ribosomal protein L15-A
M [auth O]60S ribosomal protein L16-A
N [auth P]60S ribosomal protein L17-A
O [auth Q]60S ribosomal protein L18-A
P [auth R]60S ribosomal protein L19-A
Q [auth S]60S ribosomal protein L20-A
R [auth T]60S ribosomal protein L21-A
S [auth U]60S ribosomal protein L22-A
T [auth V]60S ribosomal protein L23-A
U [auth W]Ribosome assembly factor MRT4
V [auth X]60S ribosomal protein L25
W [auth Y]60S ribosomal protein L26-A
X [auth Z]60S ribosomal protein L27-A
Y [auth a]60S ribosomal protein L28
Z [auth b]Nucleolar GTP-binding protein 1
AA [auth c]60S ribosomal protein L30
BA [auth d]60S ribosomal protein L31-A
CA [auth e]60S ribosomal protein L32
DA [auth f]60S ribosomal protein L33-A
FA [auth h]60S ribosomal protein L35-A
GA [auth i]60S ribosomal protein L36-A
HA [auth j]60S ribosomal protein L37-A
IA [auth k]60S ribosomal protein L38
JA [auth m]Nucleolar GTP-binding protein 2
KA [auth p]60S ribosomal protein L43-A
LA [auth r]Ribosome biogenesis protein NSA2-
MA [auth u]Ribosome biogenesis protein RLP24
NA [auth v]Ribosome biogenesis protein RPF2
OA [auth w]Regulator of ribosome biosynthesis-
PA [auth x]Ribosome assembly protein 4-
QA [auth y]Eukaryotic translation initiation factor 6
RA [auth z]UPF0642 protein YBL028C- -
SA [auth 1]RDN25-1 rRNA---
TA [auth 2]RDN5.8-1 rRNA---
UA [auth 3]RDN5-2 rRNA---
EA [auth g]60S ribosomal protein L34-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR001921Large ribosomal subunit protein eL8Family
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
I [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
I [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
I [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
I [auth J]IPR002132Large ribosomal subunit protein uL5Family
J [auth L]IPR001380Large ribosomal subunit protein eL13Family
J [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
K [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth M]IPR039660Large ribosomal subunit protein eL14Family
K [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
K [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
K [auth M]IPR005824KOWDomain
L [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
L [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
L [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
L [auth N]IPR000439Large ribosomal subunit protein eL15Family
M [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
M [auth O]IPR005822Large ribosomal subunit protein uL13Family
M [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
M [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
N [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
N [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
N [auth P]IPR001063Large ribosomal subunit protein uL22Family
N [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
O [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
O [auth Q]IPR000039Large ribosomal subunit protein eL18Family
O [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
P [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
P [auth R]IPR039547Large ribosomal subunit protein eL19Family
P [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
P [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
P [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
P [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
Q [auth S]IPR028877Large ribosomal subunit protein eL20Family
Q [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
Q [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
R [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
R [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
R [auth T]IPR001147Large ribosomal subunit protein eL21Family
R [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth U]IPR002671Large ribosomal subunit protein eL22Family
S [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
T [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
T [auth V]IPR000218Large ribosomal subunit protein uL14Family
T [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
U [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
U [auth W]IPR001790Large ribosomal subunit protein uL10Family
U [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
U [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
U [auth W]IPR033867Ribosome assembly factor Mrt4Family
V [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
V [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
V [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
V [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
V [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
W [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
W [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
W [auth Y]IPR005824KOWDomain
W [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
W [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
X [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
X [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
X [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth Z]IPR001141Large ribosomal subunit protein eL27Family
X [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Y [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Y [auth a]IPR030878Large ribosomal subunit protein uL15Family
Y [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
Y [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Z [auth b]IPR024926Nucleolar GTP-binding protein 1Family
Z [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
Z [auth b]IPR012973NOG, C-terminalDomain
Z [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
Z [auth b]IPR041623NOG1, N-terminal helical domainDomain
Z [auth b]IPR006073GTP binding domainDomain
Z [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
AA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
AA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
AA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
BA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
BA [auth d]IPR000054Large ribosomal subunit protein eL31Family
CA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
CA [auth e]IPR001515Large ribosomal subunit protein eL32Family
CA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
DA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
DA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth f]IPR001780Large ribosomal subunit protein eL33Family
DA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
FA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
FA [auth h]IPR001854Large ribosomal subunit protein uL29Family
FA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
FA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
GA [auth i]IPR000509Large ribosomal subunit protein eL36Family
GA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
HA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
HA [auth j]IPR001569Large ribosomal subunit protein eL37Family
HA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
HA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth k]IPR002675Large ribosomal subunit protein eL38Family
IA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
JA [auth m]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
JA [auth m]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
JA [auth m]IPR006073GTP binding domainDomain
JA [auth m]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
JA [auth m]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
JA [auth m]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
KA [auth p]IPR002674Large ribosomal subunit protein eL43Family
KA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
LA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
LA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
MA [auth u]IPR011017TRASH domainDomain
MA [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
MA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
NA [auth v]IPR039770Ribosome biogenesis protein Rpf2Family
NA [auth v]IPR007109Brix domainDomain
OA [auth w]IPR007023Ribosomal biogenesis regulatory proteinFamily
PA [auth x]IPR001680WD40 repeatRepeat
PA [auth x]IPR019775WD40 repeat, conserved siteConserved Site
PA [auth x]IPR012972NLEDomain
PA [auth x]IPR020472G-protein beta WD-40 repeatRepeat
PA [auth x]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
PA [auth x]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
QA [auth y]IPR002769Translation initiation factor IF6Family
RA [auth z]IPR019434Domain of unknown function DUF2423Domain
EA [auth g]IPR008195Large ribosomal subunit protein eL34Family
EA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site