6ZW5 | pdb_00006zw5

C15 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth AC]	Glyco_transf_41	e6zw5AC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
ZA [auth AB]	MIF	e6zw5AB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Z [auth AA]	MIF	e6zw5AA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
YB [auth ZB]	MIF	e6zw5ZB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
YA [auth ZA]	MIF	e6zw5ZA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Y [auth Z]	Trypsin	e6zw5Z1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
XB [auth YB]	MIF	e6zw5YB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
XA [auth YA]	MIF	e6zw5YA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
X [auth Y]	Glyco_transf_41	e6zw5Y1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
WB [auth XB]	MIF	e6zw5XB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
WA [auth XA]	Trypsin	e6zw5XA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
W [auth X]	MIF	e6zw5X1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
VB [auth WB]	MIF	e6zw5WB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
VA [auth WA]	Glyco_transf_41	e6zw5WA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
V [auth W]	MIF	e6zw5W1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
UB [auth VB]	Trypsin	e6zw5VB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
UA [auth VA]	MIF	e6zw5VA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
U [auth V]	MIF	e6zw5V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
TB [auth UB]	Glyco_transf_41	e6zw5UB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
TA [auth UA]	MIF	e6zw5UA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
T	MIF	e6zw5T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
SB [auth TB]	MIF	e6zw5TB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
SA [auth TA]	MIF	e6zw5TA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
S	Trypsin	e6zw5S1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
RB [auth SB]	MIF	e6zw5SB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
RA [auth SA]	MIF	e6zw5SA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
R	Glyco_transf_41	e6zw5R1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
QB [auth RB]	MIF	e6zw5RB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
QA [auth RA]	Trypsin	e6zw5RA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
Q	MIF	e6zw5Q1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
PB [auth QB]	MIF	e6zw5QB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
PA [auth QA]	Glyco_transf_41	e6zw5QA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
P	MIF	e6zw5P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
OB [auth PB]	Trypsin	e6zw5PB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
OA [auth PA]	MIF	e6zw5PA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
O	MIF	e6zw5O1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
NB [auth OB]	Glyco_transf_41	e6zw5OB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
NA [auth OA]	MIF	e6zw5OA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
N	MIF	e6zw5N1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
MB [auth NB]	MIF	e6zw5NB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
MA [auth NA]	MIF	e6zw5NA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
M	Trypsin	e6zw5M1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
LC [auth MC]	Glyco_transf_41	e6zw5MC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
LB [auth MB]	MIF	e6zw5MB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
LA [auth MA]	MIF	e6zw5MA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
L	Glyco_transf_41	e6zw5L1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
KC [auth LC]	MIF	e6zw5LC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
KB [auth LB]	MIF	e6zw5LB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
KA [auth LA]	Trypsin	e6zw5LA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
K	MIF	e6zw5K1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
JC [auth KC]	MIF	e6zw5KC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
JB [auth KB]	MIF	e6zw5KB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
JA [auth KA]	Glyco_transf_41	e6zw5KA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
J	MIF	e6zw5J1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
IC [auth JC]	MIF	e6zw5JC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
IB [auth JB]	Trypsin	e6zw5JB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
IA [auth JA]	MIF	e6zw5JA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
I	MIF	e6zw5I1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
HC [auth IC]	MIF	e6zw5IC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
HB [auth IB]	Glyco_transf_41	e6zw5IB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
HA [auth IA]	MIF	e6zw5IA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
H	MIF	e6zw5H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
GC [auth HC]	Trypsin	e6zw5HC1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
GB [auth HB]	MIF	e6zw5HB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
GA [auth HA]	MIF	e6zw5HA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
G	Trypsin	e6zw5G1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
FC [auth GC]	Glyco_transf_41	e6zw5GC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
FB [auth GB]	MIF	e6zw5GB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
FA [auth GA]	MIF	e6zw5GA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
F	Glyco_transf_41	e6zw5F1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
EC [auth FC]	MIF	e6zw5FC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
EB [auth FB]	MIF	e6zw5FB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
EA [auth FA]	Trypsin	e6zw5FA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
E	MIF	e6zw5E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
DC [auth EC]	MIF	e6zw5EC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
DB [auth EB]	MIF	e6zw5EB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
DA [auth EA]	Glyco_transf_41	e6zw5EA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
D	MIF	e6zw5D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
CC [auth DC]	MIF	e6zw5DC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
CB [auth DB]	Trypsin	e6zw5DB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
CA [auth DA]	MIF	e6zw5DA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
C	MIF	e6zw5C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BC [auth CC]	MIF	e6zw5CC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BB [auth CB]	Glyco_transf_41	e6zw5CB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
BA [auth CA]	MIF	e6zw5CA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
B	MIF	e6zw5B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
AC [auth BC]	Trypsin	e6zw5BC1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
AB [auth BB]	MIF	e6zw5BB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
AA [auth BA]	MIF	e6zw5BA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
A	Trypsin	e6zw5A1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth BA], AB [auth BB], AC [auth BC], B, A, AA [auth BA], AB [auth BB], AC [auth BC], B, BA [auth CA], BB [auth CB], BC [auth CC], C, CA [auth DA], CB [auth DB], CC [auth DC], D, DA [auth EA], DB [auth EB], DC [auth EC], E, EA [auth FA], EB [auth FB], EC [auth FC], F, FA [auth GA], FB [auth GB], FC [auth GC], G, GA [auth HA], GB [auth HB], GC [auth HC], H, HA [auth IA], HB [auth IB], HC [auth IC], I, IA [auth JA], IB [auth JB], IC [auth JC], J, JA [auth KA], JB [auth KB], JC [auth KC], K, KA [auth LA], KB [auth LB], KC [auth LC], L, LA [auth MA], LB [auth MB], LC [auth MC], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], UB [auth VB], V [auth W], VA [auth WA], VB [auth WB], W [auth X], WA [auth XA], WB [auth XB], X [auth Y], XA [auth YA], XB [auth YB], Y [auth Z], YA [auth ZA], YB [auth ZB], Z [auth AA], ZA [auth AB], ZB [auth AC]	PF04012	PspA/IM30 family (PspA_IM30)	PspA/IM30 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth BA], AB [auth BB], AC [auth BC], B, A, AA [auth BA], AB [auth BB], AC [auth BC], B, BA [auth CA], BB [auth CB], BC [auth CC], C, CA [auth DA], CB [auth DB], CC [auth DC], D, DA [auth EA], DB [auth EB], DC [auth EC], E, EA [auth FA], EB [auth FB], EC [auth FC], F, FA [auth GA], FB [auth GB], FC [auth GC], G, GA [auth HA], GB [auth HB], GC [auth HC], H, HA [auth IA], HB [auth IB], HC [auth IC], I, IA [auth JA], IB [auth JB], IC [auth JC], J, JA [auth KA], JB [auth KB], JC [auth KC], K, KA [auth LA], KB [auth LB], KC [auth LC], L, LA [auth MA], LB [auth MB], LC [auth MC], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], UB [auth VB], V [auth W], VA [auth WA], VB [auth WB], W [auth X], WA [auth XA], WB [auth XB], X [auth Y], XA [auth YA], XB [auth YB], Y [auth Z], YA [auth ZA], YB [auth ZB], Z [auth AA], ZA [auth AB], ZB [auth AC]	vipp1	binding lipid binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth BA], AB [auth BB], AC [auth BC], B, A, AA [auth BA], AB [auth BB], AC [auth BC], B, BA [auth CA], BB [auth CB], BC [auth CC], C, CA [auth DA], CB [auth DB], CC [auth DC], D, DA [auth EA], DB [auth EB], DC [auth EC], E, EA [auth FA], EB [auth FB], EC [auth FC], F, FA [auth GA], FB [auth GB], FC [auth GC], G, GA [auth HA], GB [auth HB], GC [auth HC], H, HA [auth IA], HB [auth IB], HC [auth IC], I, IA [auth JA], IB [auth JB], IC [auth JC], J, JA [auth KA], JB [auth KB], JC [auth KC], K, KA [auth LA], KB [auth LB], KC [auth LC], L, LA [auth MA], LB [auth MB], LC [auth MC], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], UB [auth VB], V [auth W], VA [auth WA], VB [auth WB], W [auth X], WA [auth XA], WB [auth XB], X [auth Y], XA [auth YA], XB [auth YB], Y [auth Z], YA [auth ZA], YB [auth ZB], Z [auth AA], ZA [auth AB], ZB [auth AC]	IPR007157	PspA/VIPP1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.