6ZVS | pdb_00006zvs

C12 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Trypsin	e6zvsA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
AA [auth BA]	MIF	e6zvsBA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
AB [auth BB]	MIF	e6zvsBB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
B	MIF	e6zvsB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BA [auth CA]	MIF	e6zvsCA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BB [auth CB]	Glyco_transf_41	e6zvsCB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
CA [auth DA]	MIF	e6zvsDA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
CB [auth DB]	Trypsin	e6zvsDB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
D	MIF	e6zvsD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
DA [auth EA]	Glyco_transf_41	e6zvsEA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
DB [auth EB]	MIF	e6zvsEB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
E	MIF	e6zvsE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
EB [auth FB]	MIF	e6zvsFB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
F	Glyco_transf_41	e6zvsF1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
FA [auth GA]	MIF	e6zvsGA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
FB [auth GB]	MIF	e6zvsGB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
G	Trypsin	e6zvsG1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
GA [auth HA]	MIF	e6zvsHA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
GB [auth HB]	MIF	e6zvsHB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
H	MIF	e6zvsH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
HA [auth IA]	MIF	e6zvsIA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
HB [auth IB]	Glyco_transf_41	e6zvsIB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
IA [auth JA]	MIF	e6zvsJA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
IB [auth JB]	Trypsin	e6zvsJB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
J	MIF	e6zvsJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
JA [auth KA]	Glyco_transf_41	e6zvsKA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
JB [auth KB]	MIF	e6zvsKB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
KA [auth LA]	Trypsin	e6zvsLA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
KB [auth LB]	MIF	e6zvsLB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
L	Glyco_transf_41	e6zvsL1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
LA [auth MA]	MIF	e6zvsMA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
LB [auth MB]	MIF	e6zvsMB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
M	Trypsin	e6zvsM1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
MA [auth NA]	MIF	e6zvsNA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
MB [auth NB]	MIF	e6zvsNB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
N	MIF	e6zvsN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
NA [auth OA]	MIF	e6zvsOA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
O	MIF	e6zvsO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
OA [auth PA]	MIF	e6zvsPA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
OB [auth PB]	Trypsin	e6zvsPB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
P	MIF	e6zvsP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
PA [auth QA]	Glyco_transf_41	e6zvsQA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
PB [auth QB]	MIF	e6zvsQB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Q	MIF	e6zvsQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
QA [auth RA]	Trypsin	e6zvsRA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
QB [auth RB]	MIF	e6zvsRB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
R	Glyco_transf_41	e6zvsR1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
RA [auth SA]	MIF	e6zvsSA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
RB [auth SB]	MIF	e6zvsSB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
S	Trypsin	e6zvsS1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
SA [auth TA]	MIF	e6zvsTA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
SB [auth TB]	MIF	e6zvsTB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
T	MIF	e6zvsT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
TA [auth UA]	MIF	e6zvsUA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
TB [auth UB]	Glyco_transf_41	e6zvsUB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
U [auth V]	MIF	e6zvsV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
UA [auth VA]	MIF	e6zvsVA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
V [auth W]	MIF	e6zvsW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
VA [auth WA]	Glyco_transf_41	e6zvsWA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
W [auth X]	MIF	e6zvsX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
WA [auth XA]	Trypsin	e6zvsXA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
X [auth Y]	Glyco_transf_41	e6zvsY1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
XA [auth YA]	MIF	e6zvsYA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Y [auth Z]	Trypsin	e6zvsZ1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
YA [auth ZA]	MIF	e6zvsZA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Z [auth AA]	MIF	e6zvsAA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
ZA [auth AB]	MIF	e6zvsAB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
NB [auth OB]	Glyco_transf_41	e6zvsOB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
K	MIF	e6zvsK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
I	MIF	e6zvsI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
EA [auth FA]	Trypsin	e6zvsFA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
C	MIF	e6zvsC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth BA], AB [auth BB], B, BA [auth CA], A, AA [auth BA], AB [auth BB], B, BA [auth CA], BB [auth CB], C, CA [auth DA], CB [auth DB], D, DA [auth EA], DB [auth EB], E, EA [auth FA], EB [auth FB], F, FA [auth GA], FB [auth GB], G, GA [auth HA], GB [auth HB], H, HA [auth IA], HB [auth IB], I, IA [auth JA], IB [auth JB], J, JA [auth KA], JB [auth KB], K, KA [auth LA], KB [auth LB], L, LA [auth MA], LB [auth MB], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], V [auth W], VA [auth WA], W [auth X], WA [auth XA], X [auth Y], XA [auth YA], Y [auth Z], YA [auth ZA], Z [auth AA], ZA [auth AB]	PF04012	PspA/IM30 family (PspA_IM30)	PspA/IM30 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth BA], AB [auth BB], B, BA [auth CA], A, AA [auth BA], AB [auth BB], B, BA [auth CA], BB [auth CB], C, CA [auth DA], CB [auth DB], D, DA [auth EA], DB [auth EB], E, EA [auth FA], EB [auth FB], F, FA [auth GA], FB [auth GB], G, GA [auth HA], GB [auth HB], H, HA [auth IA], HB [auth IB], I, IA [auth JA], IB [auth JB], J, JA [auth KA], JB [auth KB], K, KA [auth LA], KB [auth LB], L, LA [auth MA], LB [auth MB], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], V [auth W], VA [auth WA], W [auth X], WA [auth XA], X [auth Y], XA [auth YA], Y [auth Z], YA [auth ZA], Z [auth AA], ZA [auth AB]	Vipp1	binding lipid binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth BA], AB [auth BB], B, BA [auth CA], A, AA [auth BA], AB [auth BB], B, BA [auth CA], BB [auth CB], C, CA [auth DA], CB [auth DB], D, DA [auth EA], DB [auth EB], E, EA [auth FA], EB [auth FB], F, FA [auth GA], FB [auth GB], G, GA [auth HA], GB [auth HB], H, HA [auth IA], HB [auth IB], I, IA [auth JA], IB [auth JB], J, JA [auth KA], JB [auth KB], K, KA [auth LA], KB [auth LB], L, LA [auth MA], LB [auth MB], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], V [auth W], VA [auth WA], W [auth X], WA [auth XA], X [auth Y], XA [auth YA], Y [auth Z], YA [auth ZA], Z [auth AA], ZA [auth AB]	IPR007157	PspA/VIPP1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.