Annotations: 6ZTY

Assembly intermediates of orthoreovirus captured in the cell

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth W]	SCOP2B Superfamily	Outer capsid protein sigma 3	8071741	3001282	SCOP2B (2022-06-29)
E [auth V]	SCOP2B Superfamily	Outer capsid protein sigma 3	8071741	3001282	SCOP2B (2022-06-29)
D [auth U]	SCOP2B Superfamily	Outer capsid protein sigma 3	8071741	3001282	SCOP2B (2022-06-29)
C [auth J]	SCOP2B Superfamily	Reovirus mu1 protein-like	8091411	3002506	SCOP2B (2022-06-29)
C [auth J]	SCOP2B Superfamily	Reovirus mu1 protein-like	8091411	3002506	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	Reovirus mu1 protein-like	8091411	3002506	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	Reovirus mu1 protein-like	8091411	3002506	SCOP2B (2022-06-29)
A [auth H]	SCOP2B Superfamily	Reovirus mu1 protein-like	8091411	3002506	SCOP2B (2022-06-29)
A [auth H]	SCOP2B Superfamily	Reovirus mu1 protein-like	8091411	3002506	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth W]	WD40	e6ztyW1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
E [auth V]	WD40	e6ztyV1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
D [auth U]	WD40	e6ztyU1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
C [auth J]	WD40	e6ztyJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
B [auth I]	WD40	e6ztyI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
A [auth H]	WD40	e6ztyH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth U], E [auth V], F [auth W]	PF00979	Reovirus outer capsid protein, Sigma 3 (Reovirus_cap)	Reovirus outer capsid protein, Sigma 3	-	Family
A [auth H], B [auth I], C [auth J]	PF05993	Reovirus major virion structural protein Mu-1/Mu-1C (M2) (Reovirus_M2)	Reovirus major virion structural protein Mu-1/Mu-1C (M2)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth U], E [auth V], F [auth W]	Outer capsid protein sigma-3	enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding nucleic acid binding	viral process viral life cycle symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms response to stimulus response to other organism symbiont-mediated perturbation of host defenses symbiont-mediated suppression of host PKR/eIFalpha signaling symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway viral process viral life cycle symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms response to stimulus response to other organism symbiont-mediated perturbation of host defenses symbiont-mediated suppression of host PKR/eIFalpha signaling symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host process symbiont-mediated suppression of host-directed shutoff of host translation symbiont-mediated suppression of host defenses response to host response to external biotic stimulus symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm viral capsid icosahedral viral capsid virion component viral outer capsid
A [auth H], B [auth I], C [auth J]	Outer capsid protein mu-1	host cell surface binding binding	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell mitochondrion viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell mitochondrion viral capsid virion component host cell plasma membrane host cell membrane icosahedral viral capsid viral outer capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth U], E [auth V], F [auth W]	IPR000153	Reovirus, outer capsid sigma 3	Family
D [auth U], E [auth V], F [auth W]	IPR023634	Reovirus, outer capsid sigma-3 domain superfamily	Homologous Superfamily
A [auth H], B [auth I], C [auth J]	IPR015961	Mu1 membrane penetration protein, domain I	Homologous Superfamily
A [auth H], B [auth I], C [auth J]	IPR015960	Mu1 membrane penetration protein, domain IV	Homologous Superfamily
A [auth H], B [auth I], C [auth J]	IPR036256	Mu1/VP4 superfamily	Homologous Superfamily
A [auth H], B [auth I], C [auth J]	IPR009113	Outer capsid protein Mu1/VP4	Family
A [auth H], B [auth I], C [auth J]	IPR015962	Mu1 membrane penetration protein, domain II	Homologous Superfamily
A [auth H], B [auth I], C [auth J]	IPR044937	Mu1 membrane penetration protein, domain III	Homologous Superfamily