6ZT5
Complex between a homodimer of Mycobacterium smegmatis MfpA and a single copy of the N-terminal 47 kDa fragment of the Mycobacterium smegmatis DNA Gyrase B subunit
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d6zt5c2 | Alpha and beta proteins (a+b) | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | automated matches | automated matches | (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], | SCOPe (2.08) |
C | d6zt5c1 | Alpha and beta proteins (a+b) | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | automated matches | automated matches | (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Pentapeptide repeat-like | 8102640 | 4002075 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Pentapeptide repeat-like | 8102641 | 3000796 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Pentapeptide repeat-like | 8102641 | 3000796 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | GHKL (Gyrase, Hsp90, Histidine Kinase, MutL) domain-like | 8101345 | 3000091 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pentapeptide_4 | e6zt5A1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pentapeptide repeats (From Topology) | T: Pentapeptide repeats | F: Pentapeptide_4 | ECOD (1.6) |
B | Pentapeptide_4 | e6zt5B1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pentapeptide repeats (From Topology) | T: Pentapeptide repeats | F: Pentapeptide_4 | ECOD (1.6) |
C | DNA_gyraseB | e6zt5C2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: DNA_gyraseB | ECOD (1.6) |
C | HATPase_c_1 | e6zt5C1 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: HATPase_c_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13599 | Pentapeptide repeats (9 copies) (Pentapeptide_4) | Pentapeptide repeats (9 copies) | - | Repeat | |
PF00204 | DNA gyrase B (DNA_gyraseB) | DNA gyrase B | This family represents the second domain of DNA gyrase B which has a ribosomal S5 domain 2-like fold. This family is structurally related to PF01119. | Domain | |
PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR051082 | Pentapeptide repeat and BTB/POZ domain-containing protein | Family | |
IPR001646 | Pentapeptide repeat | Repeat | |
IPR011557 | DNA gyrase, subunit B | Family | |
IPR018522 | DNA topoisomerase, type IIA, conserved site | Conserved Site | |
IPR013506 | DNA topoisomerase, type IIA, subunit B, domain 2 | Domain | |
IPR013760 | DNA topoisomerase, type IIA-like domain superfamily | Homologous Superfamily | |
IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | Homologous Superfamily | |
IPR006171 | TOPRIM domain | Domain | |
IPR000565 | DNA topoisomerase, type IIA, subunit B | Family | |
IPR003594 | Histidine kinase/HSP90-like ATPase domain | Domain | |
IPR013759 | DNA topoisomerase, type IIA, subunit B, C-terminal | Homologous Superfamily | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR001241 | DNA topoisomerase, type IIA | Family | |
IPR002288 | DNA gyrase B subunit, C-terminal | Domain | |
IPR014721 | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Homologous Superfamily |