6ZQT
Crystal structure of the RLIP76 Ral binding domain mutant (E427H/Q433L/K440R) in complex with RalB-GMPPNP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6zqta_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth B] | d6zqtb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ras | e6zqtA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
C [auth B] | Ras | e6zqtB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
B [auth C] | KOG4370 | e6zqtC1 | A: alpha bundles | X: Long alpha-hairpin | H: Ral binding domain of RLIP76 (From Topology) | T: Ral binding domain of RLIP76 | F: KOG4370 | ECOD (1.6) |
D | KOG4370 | e6zqtD1 | A: alpha bundles | X: Long alpha-hairpin | H: Ral binding domain of RLIP76 (From Topology) | T: Ral binding domain of RLIP76 | F: KOG4370 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
B [auth C], D | PF20924 | RLIP76, Ral binding domain (RLIP76_Ral-bd) | RLIP76, Ral binding domain | This domain is found in RLIP76 (also known as RalA-binding protein 1, RalBP1), a multifunctional protein that interacts with multiple small G protein families and endocytosis proteins. The Ral binding domain is a coiled-coil. The orientation of its a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
A, C [auth B] | IPR005225 | Small GTP-binding domain | Domain |
A, C [auth B] | IPR020849 | Small GTPase, Ras-type | Family |
A, C [auth B] | IPR001806 | Small GTPase | Family |
B [auth C], D | IPR049041 | RalA-binding protein 1-like, Ral binding domain | Domain |
B [auth C], D | IPR008936 | Rho GTPase activation protein | Homologous Superfamily |
B [auth C], D | IPR000198 | Rho GTPase-activating protein domain | Domain |
B [auth C], D | IPR039767 | RalA-binding protein 1 | Family |