6ZPL

Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor, sybody Sb_GlyT1#7 and bound Na and Cl ions.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	(Trans)glycosidases	8037148	3000313	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	PF00209	e6zplB1	A: alpha complex topology	X: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)	H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)	T: Sodium:neurotransmitter symporter family (SNF)-like	F: PF00209	ECOD (1.6)
B [auth A]	PF00209	e6zplA1	A: alpha complex topology	X: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)	H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)	T: Sodium:neurotransmitter symporter family (SNF)-like	F: PF00209	ECOD (1.6)
C	PF02156	e6zplC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF02156	ECOD (1.6)
D [auth E]	PF07686	e6zplE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
E [auth F]	PF07686	e6zplF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF02156	Glycosyl hydrolase family 26 (Glyco_hydro_26)	Glycosyl hydrolase family 26	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Sodium- and chloride-dependent glycine transporter 1	glycine transmembrane transporter activity monoatomic cation transmembrane transporter activity L-amino acid transmembrane transporter activity organic cation transmembrane transporter activity amino acid:sodium symporter activity solute:sodium symporter activity solute:monoatomic cation symporter activity secondary active transmembrane transporter activity glycine:sodium symporter activity neutral L-amino acid:sodium symporter activity active monoatomic ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity amino acid:monoatomic cation symporter activity transporter activity glycine transmembrane transporter activity monoatomic cation transmembrane transporter activity L-amino acid transmembrane transporter activity organic cation transmembrane transporter activity amino acid:sodium symporter activity solute:sodium symporter activity solute:monoatomic cation symporter activity secondary active transmembrane transporter activity glycine:sodium symporter activity neutral L-amino acid:sodium symporter activity active monoatomic ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity amino acid:monoatomic cation symporter activity transporter activity carboxylic acid transmembrane transporter activity sodium ion transmembrane transporter activity amino acid transmembrane transporter activity organic acid:sodium symporter activity neutral L-amino acid transmembrane transporter activity active transmembrane transporter activity monoatomic ion transmembrane transporter activity organic acid transmembrane transporter activity metal ion transmembrane transporter activity transmembrane transporter activity symporter activity organic anion transmembrane transporter activity	localization transport neurotransmitter transport establishment of localization organic acid transmembrane transport import into cell organic anion transport nitrogen compound transport glycine import across plasma membrane carboxylic acid transmembrane transport carboxylic acid transport glycine transport import across plasma membrane amino acid transmembrane transport localization transport neurotransmitter transport establishment of localization organic acid transmembrane transport import into cell organic anion transport nitrogen compound transport glycine import across plasma membrane carboxylic acid transmembrane transport carboxylic acid transport glycine transport import across plasma membrane amino acid transmembrane transport neutral amino acid transport L-amino acid transport organic cation transport organic acid transport transmembrane transport amino acid transport L-alpha-amino acid transmembrane transport cellular process amino acid import across plasma membrane trans-synaptic signaling regulation of biological process signaling biological regulation cell-cell signaling synaptic transmission, glycinergic chemical synaptic transmission cell communication synaptic signaling anterograde trans-synaptic signaling cellular response to stimulus regulation of localization regulation of cellular process negative regulation of ion transmembrane transporter activity response to stimulus negative regulation of NMDA glutamate receptor activity regulation of signaling receptor activity negative regulation of monoatomic ion transport monoatomic ion transmembrane transport negative regulation of biological process regulation of transmembrane transporter activity regulation of signal transduction negative regulation of transport regulation of monoatomic ion transmembrane transport negative regulation of transmembrane transport regulation of transporter activity negative regulation of monoatomic ion transmembrane transport negative regulation of cellular process monoatomic ion transport signal transduction regulation of NMDA receptor activity regulation of monoatomic ion transmembrane transporter activity regulation of signaling regulation of transport regulation of monoatomic ion transport negative regulation of molecular function negative regulation of transporter activity regulation of molecular function regulation of transmembrane transport regulation of response to stimulus regulation of neurotransmitter receptor activity regulation of cell communication negative regulation of signaling receptor activity modulation of chemical synaptic transmission regulation of synaptic transmission, glycinergic regulation of trans-synaptic signaling positive regulation of protein metabolic process cellular biosynthetic process positive regulation of biological process organonitrogen compound biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of hemoglobin biosynthetic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process hemoglobin metabolic process positive regulation of cellular process regulation of biosynthetic process organonitrogen compound metabolic process hemoglobin biosynthetic process regulation of protein metabolic process cellular metabolic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process macromolecule biosynthetic process regulation of cellular biosynthetic process biosynthetic process regulation of hemoglobin biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process sodium ion transmembrane transport inorganic ion transmembrane transport metal ion transport inorganic cation transmembrane transport monoatomic cation transmembrane transport monoatomic cation transport sodium ion transport pigment metabolic process heme metabolic process porphyrin-containing compound biosynthetic process heme biosynthetic process pigment biosynthetic process positive regulation of tetrapyrrole biosynthetic process tetrapyrrole biosynthetic process regulation of tetrapyrrole biosynthetic process porphyrin-containing compound metabolic process positive regulation of heme biosynthetic process tetrapyrrole metabolic process regulation of heme biosynthetic process positive regulation of tetrapyrrole metabolic process regulation of tetrapyrrole metabolic process multicellular organismal process system process circulatory system process vascular process in circulatory system vascular transport transport across blood-brain barrier	cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region cellular anatomical entity synaptic membrane apical part of cell apical plasma membrane basal part of cell basal plasma membrane cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region cellular anatomical entity synaptic membrane apical part of cell apical plasma membrane basal part of cell basal plasma membrane parallel fiber to Purkinje cell synapse excitatory synapse presynapse presynaptic membrane basolateral plasma membrane membrane-bounded organelle intracellular anatomical structure dense core granule intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle neuron to neuron synapse hippocampal mossy fiber to CA3 synapse endosome postsynaptic density postsynaptic specialization asymmetric synapse transport vesicle membrane bounding membrane of organelle vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane organelle membrane exocytic vesicle lateral plasma membrane
C	Endoglucanase H	hydrolase activity, acting on glycosyl bonds glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity beta-glucosidase activity catalytic activity cellulase activity	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellulose catabolic process macromolecule metabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellulose catabolic process macromolecule metabolic process cellulose metabolic process	extracellular region cellular anatomical entity cell surface
D [auth E], E [auth F]	Sybody Sb_GlyT1#7	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR000175	Sodium:neurotransmitter symporter	Family
A [auth B], B [auth A]	IPR003028	Sodium:neurotransmitter symporter, glycine, type 1	Family
A [auth B], B [auth A]	IPR037272	Sodium:neurotransmitter symporter superfamily	Homologous Superfamily
C	IPR002105	Dockerin type I repeat	Repeat
C	IPR005087	Carbohydrate binding module family 11	Domain
C	IPR016134	Dockerin domain	Domain
C	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
C	IPR001547	Glycoside hydrolase, family 5	Domain
C	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
C	IPR036439	Dockerin domain superfamily	Homologous Superfamily
C	IPR022790	Glycosyl hydrolase family 26 domain	Domain
C	IPR018087	Glycoside hydrolase, family 5, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth A]	Pharos: P48067	atypical glycine encephalopathy amphetamine abuse Alcoholic Intoxication, Chronic intellectual disability MALT lymphoma polycystic ovary syndrome schizophrenia astrocytic tumor cutaneous lupus erythematosus malignant ependymoma psoriasis attention deficit hyperactivity disorder, inattentive type glioblastoma malignant glioma oligodendroglioma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth B], B [auth A], C	OPM	Transmembrane	Alpha-helical polytopic	APC (Amino acid-Polyamine-organoCation) superfamily	Neurotransmitter: sodium symporter

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth B], B [auth A], C	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth B], B [auth A], C	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth B], B [auth A], C	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Solute Carrier (SLC) Transporter Superfamily	glycine transporter 1 (GlyT1), inward-open state in complex with a benzoylisoindoline inhibitor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.