6ZHV
Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d6zhvb_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | Porin | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B [auth A] | d6zhva_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | Porin | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
C | d6zhvc_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | Porin | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Porins | 8033399 | 3000224 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Porins | 8033399 | 3000224 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Porins | 8033399 | 3000224 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Porin_1 | e6zhvB1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Porin_1 | ECOD (1.6) |
B [auth A] | Porin_1 | e6zhvA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Porin_1 | ECOD (1.6) |
C | Porin_1 | e6zhvC1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Porin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C | PF00267 | Gram-negative porin (Porin_1) | Gram-negative porin | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C | IPR050298 | Gram-negative bacterial outer membrane porin | Family |
A [auth B], B [auth A], C | IPR001897 | Porin, gammaproteobacterial | Family |
A [auth B], B [auth A], C | IPR033900 | Porin domain, Gram-negative type | Domain |
A [auth B], B [auth A], C | IPR023614 | Porin domain superfamily | Homologous Superfamily |
A [auth B], B [auth A], C | IPR001702 | Porin, Gram-negative type | Family |
A [auth B], B [auth A], C | IPR013793 | Porin, Gram-negative type, conserved site | Conserved Site |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Trimeric porins (n=16,S=20) | General Bacterial Porin (GBP) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |