6Z3J
Repulsive Guidance Molecule B (RGMB) in complex with Growth Differentiation Factor 5 (GDF5) (crystal form 1)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6z3ja_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6z3jb_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cystine-knot cytokines | 8070313 | 3000846 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cystine-knot cytokines | 8070313 | 3000846 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RGM family, N-terminal helical domain | 8107356 | 3002873 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RGM family, N-terminal helical domain | 8107356 | 3002873 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TGF_beta | e6z3jA1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
B | TGF_beta | e6z3jB1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
C | RGM_N_N | e6z3jC1 | A: alpha bundles | X: Spectrin repeat-like | H: Repulsive guidance molecule (RGM) N-terminal domain (From Topology) | T: Repulsive guidance molecule (RGM) N-terminal domain | F: RGM_N_N | ECOD (1.6) |
D | RGM_N_N | e6z3jD1 | A: alpha bundles | X: Spectrin repeat-like | H: Repulsive guidance molecule (RGM) N-terminal domain (From Topology) | T: Repulsive guidance molecule (RGM) N-terminal domain | F: RGM_N_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | - | Domain | |
PF06535 | Repulsive guidance molecule (RGM) N-terminus (RGM_N) | Repulsive guidance molecule (RGM) N-terminus | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
IPR015615 | Transforming growth factor-beta-related | Family | |
IPR017948 | Transforming growth factor beta, conserved site | Conserved Site | |
IPR001111 | TGF-beta, propeptide | Domain | |
IPR001839 | Transforming growth factor-beta, C-terminal | Domain | |
IPR010536 | Repulsive guidance molecule, N-terminal | Domain | |
IPR009496 | Repulsive guidance molecule, C-terminal | Domain | |
IPR040287 | Repulsive guidance molecule | Family |