6YPU

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth c]	SCOP2B Superfamily	SIS domain/Ribosomal protein S2-like	8097482	3001397	SCOP2B (2021-05-27)
D [auth e]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8097528	3001473	SCOP2B (2021-05-27)
F [auth g]	SCOP2B Superfamily	Ribosomal protein S6	8097458	3001323	SCOP2B (2021-05-27)
G [auth i]	SCOP2B Superfamily	Ribosomal protein S8	8097514	3000709	SCOP2B (2021-05-27)
I [auth m]	SCOP2B Superfamily	Nucleic acid-binding proteins	8097464	3000135	SCOP2B (2021-05-27)
K [auth q]	SCOP2B Superfamily	Ribosomal protein S16	8097484	3000680	SCOP2B (2021-05-27)
L [auth r]	SCOP2B Superfamily	Nucleic acid-binding proteins	8097504	3000135	SCOP2B (2021-05-27)
O [auth v]	SCOP2B Superfamily	Ribosomal protein S21	8097456	3002159	SCOP2B (2021-05-27)
H [auth l]	SCOP2 Family	Ribosomal protein L18p and S11	8097525	4000555	SCOP2 (2021-05-27)
H [auth l]	SCOP2 Superfamily	Translational machinery components	8097526	3000571	SCOP2 (2021-05-27)
J [auth p]	SCOP2 Family	30S Ribosomal protein S15 / 40S Ribosomal protein S13	8097477	4000767	SCOP2 (2021-05-27)
J [auth p]	SCOP2 Superfamily	S15/NS1 RNA-binding domain	8097478	3001284	SCOP2 (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth c]	PF00318	e6ypuc1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: PF00318	ECOD (1.6)
D [auth e]	PF00163,PF01479	e6ypue1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
F [auth g]	PF01250	e6ypug1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: PF01250	ECOD (1.6)
G [auth i]	PF00410	e6ypui2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
G [auth i]	PF00410	e6ypui1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
I [auth m]	PF00164	e6ypum1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00164	ECOD (1.6)
K [auth q]	PF00886	e6ypuq1	A: a+b two layers	X: Ribosomal protein S16 (From Topology)	H: Ribosomal protein S16 (From Topology)	T: Ribosomal protein S16	F: PF00886	ECOD (1.6)
L [auth r]	PF00366	e6ypur1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366	ECOD (1.6)
M [auth s]	PF01084	e6ypus1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF01084	ECOD (1.6)
N [auth u]	PF01649	e6ypuu1	A: alpha bundles	X: Spectrin repeat-like	H: Ribosomal protein S20 (From Topology)	T: Ribosomal protein S20	F: PF01649	ECOD (1.6)
O [auth v]	PF01165	e6ypuv1	A: extended segments	X: 30S ribosomal protein S21 (From Topology)	H: 30S ribosomal protein S21 (From Topology)	T: 30S ribosomal protein S21	F: PF01165	ECOD (1.6)
E [auth f]	PF03719	e6ypuf1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
E [auth f]	PF00333	e6ypuf2	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
H [auth l]	PF00411	e6ypul1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00411	ECOD (1.6)
J [auth p]	PF00312	e6ypup1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 2], B [auth 4]	16S ribosomal RNA	-	-	-
C [auth c]	30S ribosomal protein S2	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
D [auth e]	30S ribosomal protein S4	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
F [auth g]	30S ribosomal protein S6	RNA binding small ribosomal subunit rRNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
G [auth i]	30S ribosomal protein S8	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
I [auth m]	30S ribosomal protein S12	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
K [auth q]	30S ribosomal protein S16	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm
L [auth r]	30S ribosomal protein S17	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
M [auth s]	30S ribosomal protein S18	RNA binding small ribosomal subunit rRNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
N [auth u]	30S ribosomal protein S20	RNA binding small ribosomal subunit rRNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex small ribosomal subunit ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
O [auth v]	30S ribosomal protein S21	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
E [auth f]	30S ribosomal protein S5	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm
H [auth l]	30S ribosomal protein S11	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
J [auth p]	30S ribosomal protein S15	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth c]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
C [auth c]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
C [auth c]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
C [auth c]	IPR001865	Small ribosomal subunit protein uS2	Family
D [auth e]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
D [auth e]	IPR002942	RNA-binding S4 domain	Domain
D [auth e]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
D [auth e]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
D [auth e]	IPR005709	Small ribosomal subunit protein uS4, bacterial-type	Family
D [auth e]	IPR022801	Small ribosomal subunit protein uS4	Family
F [auth g]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
F [auth g]	IPR000529	Small ribosomal subunit protein bS6	Family
F [auth g]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
F [auth g]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
F [auth g]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
G [auth i]	IPR000630	Small ribosomal subunit protein uS8	Family
G [auth i]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
G [auth i]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
I [auth m]	IPR006032	Small ribosomal subunit protein uS12	Family
I [auth m]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
I [auth m]	IPR005679	Ribosomal protein uS12, bacterial-type	Family
K [auth q]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
K [auth q]	IPR000307	Small ribosomal subunit protein bS16	Family
K [auth q]	IPR020592	Small ribosomal subunit protein bS16, conserved site	Conserved Site
L [auth r]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
L [auth r]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
L [auth r]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
L [auth r]	IPR000266	Small ribosomal subunit protein uS17	Family
M [auth s]	IPR001648	Small ribosomal subunit protein bS18	Family
M [auth s]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
M [auth s]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
N [auth u]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
N [auth u]	IPR002583	Small ribosomal subunit protein bS20	Family
O [auth v]	IPR038380	Small ribosomal subunit protein bS21 superfamily	Homologous Superfamily
O [auth v]	IPR018278	Small ribosomal subunit protein bS21, conserved site	Conserved Site
O [auth v]	IPR001911	Small ribosomal subunit protein bS21	Family
E [auth f]	IPR000851	Small ribosomal subunit protein uS5	Family
E [auth f]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
E [auth f]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
E [auth f]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth f]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
E [auth f]	IPR005712	Small ribosomal subunit protein uS5, bacterial-type	Family
E [auth f]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
H [auth l]	IPR001971	Small ribosomal subunit protein uS11	Family
H [auth l]	IPR019981	Small ribosomal subunit protein uS11, bacterial-type	Family
H [auth l]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
H [auth l]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
J [auth p]	IPR005290	Small ribosomal subunit protein uS15, bacterial-type	Family
J [auth p]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
J [auth p]	IPR000589	Small ribosomal subunit protein uS15	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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6YPU

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage