6XZQ
Influenza C virus polymerase in complex with human ANP32A - Subclass 1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
H [auth G] | SCOP2B Superfamily | L domain-like | 8101539 | 3001010 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | Flu_PA_C | e6xzqA1 | A: a+b complex topology | X: Polymerase acidic protein (From Topology) | H: Polymerase acidic protein (From Topology) | T: Polymerase acidic protein | F: Flu_PA_C | ECOD (1.6) |
B [auth A] | Flu_PA_N | e6xzqA2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Flu_PA_N | ECOD (1.6) |
D [auth C] | Flu_PB2_6th | e6xzqC4 | A: alpha arrays | X: PB2 '627' domain-related (From Homology) | H: PB2 '627' domain-related | T: Polymerase basic protein 2 (PB2) '627' domain | F: Flu_PB2_6th | ECOD (1.6) |
D [auth C] | Flu_PB2_4th | e6xzqC1 | A: alpha arrays | X: Helical domain in PB2 (From Topology) | H: Helical domain in PB2 (From Topology) | T: Helical domain in PB2 | F: Flu_PB2_4th | ECOD (1.6) |
D [auth C] | Flu_PB2_7th | e6xzqC2 | A: a+b two layers | X: PB2 C-terminal domain-like (From Topology) | H: PB2 C-terminal domain-like (From Topology) | T: PB2 C-terminal domain-like | F: Flu_PB2_7th | ECOD (1.6) |
D [auth C] | Flu_PB2_2nd | e6xzqC3 | A: a+b two layers | X: a+b domain in PB2 (From Topology) | H: a+b domain in PB2 (From Topology) | T: a+b domain in PB2 | F: Flu_PB2_2nd | ECOD (1.6) |
D [auth C] | Flu_PB2_5th | e6xzqC6 | A: a+b three layers | X: Polymerase basic protein 2 cap-binding domain (From Topology) | H: Polymerase basic protein 2 cap-binding domain (From Topology) | T: Polymerase basic protein 2 cap-binding domain | F: Flu_PB2_5th | ECOD (1.6) |
D [auth C] | Flu_PB2_3rd | e6xzqC5 | A: a+b complex topology | X: Middle domain in PB2 (From Topology) | H: Middle domain in PB2 (From Topology) | T: Middle domain in PB2 | F: Flu_PB2_3rd | ECOD (1.6) |
D [auth C] | Flu_PB2_1st | e6xzqC7 | A: extended segments | X: RNA polymerase PB2 N-terminal fragment (From Topology) | H: RNA polymerase PB2 N-terminal fragment (From Topology) | T: RNA polymerase PB2 N-terminal fragment | F: Flu_PB2_1st | ECOD (1.6) |
G [auth F] | Flu_PB2_6th | e6xzqF1 | A: alpha arrays | X: PB2 '627' domain-related (From Homology) | H: PB2 '627' domain-related | T: Polymerase basic protein 2 (PB2) '627' domain | F: Flu_PB2_6th | ECOD (1.6) |
G [auth F] | Flu_PB2_7th | e6xzqF2 | A: a+b two layers | X: PB2 C-terminal domain-like (From Topology) | H: PB2 C-terminal domain-like (From Topology) | T: PB2 C-terminal domain-like | F: Flu_PB2_7th | ECOD (1.6) |
H [auth G] | LRR_9 | e6xzqG1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_9 | ECOD (1.6) |
C [auth B] | Flu_PB1_2nd | e6xzqB3 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: Flu_PB1_2nd | ECOD (1.6) |
C [auth B] | Flu_PB1_1st | e6xzqB2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: Flu_PB1_1st | ECOD (1.6) |
C [auth B] | Flu_PB1_3rd | e6xzqB1 | A: extended segments | X: RNA polymerase PB1 C-terminal fragment (From Topology) | H: RNA polymerase PB1 C-terminal fragment (From Topology) | T: RNA polymerase PB1 C-terminal fragment | F: Flu_PB1_3rd | ECOD (1.6) |
F [auth E] | Flu_PB1_1st | e6xzqE1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: Flu_PB1_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A], E [auth D] | PF00603 | Influenza RNA-dependent RNA polymerase subunit PA (Flu_PA) | Influenza RNA-dependent RNA polymerase subunit PA | - | Family |
D [auth C], G [auth F] | PF00604 | Influenza RNA polymerase PB2 CAP binding domain (Flu_PB2_5th) | Influenza RNA polymerase PB2 CAP binding domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain |
D [auth C], G [auth F] | PF20948 | Influenza RNA polymerase PB2 second domain (Flu_PB2_2nd) | Influenza RNA polymerase PB2 second domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain |
D [auth C], G [auth F] | PF20947 | Influenza RNA polymerase PB2 N-terminal region (Flu_PB2_1st) | Influenza RNA polymerase PB2 N-terminal region | - | Family |
D [auth C], G [auth F] | PF20949 | Influenza RNA polymerase PB2 middle domain (Flu_PB2_3rd) | Influenza RNA polymerase PB2 middle domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain |
D [auth C], G [auth F] | PF20951 | Influenza RNA polymerase PB2 6th domain (Flu_PB2_6th) | Influenza RNA polymerase PB2 6th domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain |
D [auth C], G [auth F] | PF20950 | Influenza RNA polymerase PB2 helical domain (Flu_PB2_4th) | Influenza RNA polymerase PB2 helical domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain |
D [auth C], G [auth F] | PF20952 | Influenza RNA polymerase PB2 C-terminal domain (Flu_PB2_7th) | Influenza RNA polymerase PB2 C-terminal domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain |
H [auth G] | PF14580 | Leucine-rich repeat (LRR_9) | Leucine-rich repeat | - | Repeat |
C [auth B], F [auth E] | PF00602 | Influenza RNA-dependent RNA polymerase subunit PB1 (Flu_PB1) | Influenza RNA-dependent RNA polymerase subunit PB1 | - | Family |