6XXN

Crystal structure of NB7, a nanobody targeting prostate specific membrane antigen

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d6xxne1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
E	d6xxne2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
A	d6xxna1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
A	d6xxna2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
B	d6xxnb1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
B	d6xxnb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
C	d6xxnc1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
C	d6xxnc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
D	d6xxnd1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
D	d6xxnd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
F	d6xxnf1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
F	d6xxnf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
G	d6xxng1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
G	d6xxng2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
H	d6xxnh1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)
H	d6xxnh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Arabian camel (Camelus dromedarius ) [TaxId: 9838 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	V-set_12	e6xxnE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
A	V-set_12	e6xxnA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
B	V-set_12	e6xxnB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
C	V-set_12	e6xxnC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
D	V-set_12	e6xxnD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
F	V-set_12	e6xxnF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
G	V-set_12	e6xxnG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
H	V-set_12	e6xxnH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A, B, C, D, E A, B, C, D, E, F	VHH NB7	VH	Camelus dromedarius (Arabian camel)	IGHV3S45*01	V-DOMAIN VH	IG	VH	IMGT (202436-0)
G	VHH NB7	VH	Camelus dromedarius (Arabian camel)	IGHV3S45*01	V-DOMAIN VH	IG	VH	IMGT (202436-0)
H	VHH NB7	VH	Camelus dromedarius (Arabian camel)	IGHV3S45*01	V-DOMAIN VH	IG	VH	IMGT (202436-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A, B, C, D, E A, B, C, D, E, F	Heavy Chain	IGHV1	-	-	SAbDab (2024-09-13)
G	Heavy Chain	IGHV1	-	-	SAbDab (2024-09-13)
H	Heavy Chain	IGHV1	-	-	SAbDab (2024-09-13)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.