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6XWE
Crystal structure of LYK3 ectodomain
External Resource: Annotation
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
LysM_1
e6xweA2
A: alpha arrays
X: HTH
H: LysM domain (From Topology)
T: LysM domain
F: LysM_1
ECOD (1.6)
A
LysM_5
e6xweA1
A: alpha arrays
X: HTH
H: LysM domain (From Topology)
T: LysM domain
F: LysM_5
ECOD (1.6)
A
UNK_F_TYPE
e6xweA3
A: alpha arrays
X: HTH
H: LysM domain (From Topology)
T: LysM domain
F: UNK_F_TYPE
ECOD (1.6)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF01476
LysM domain (LysM)
LysM domain
The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
LysM domain receptor-like kinase 3
binding
adenyl ribonucleotide binding
nucleotide binding
purine ribonucleotide binding
purine ribonucleoside triphosphate binding
nucleoside phosphate binding
ion binding
purine nucleotide binding
organic cyclic compound binding
anion binding
adenyl nucleotide binding
ATP binding
heterocyclic compound binding
carbohydrate derivative binding
binding
adenyl ribonucleotide binding
nucleotide binding
purine ribonucleotide binding
purine ribonucleoside triphosphate binding
nucleoside phosphate binding
ion binding
purine nucleotide binding
organic cyclic compound binding
anion binding
adenyl nucleotide binding
ATP binding
heterocyclic compound binding
carbohydrate derivative binding
ribonucleotide binding
small molecule binding
kinase activity
transferase activity
catalytic activity
transferase activity, transferring phosphorus-containing groups
protein serine/threonine kinase activity
catalytic activity, acting on a protein
protein kinase activity
phosphotransferase activity, alcohol group as acceptor
molecular transducer activity
signaling receptor activity
transmembrane receptor protein kinase activity
transmembrane signaling receptor activity
protein serine kinase activity
Less
nodulation
developmental process
anatomical structure morphogenesis
anatomical structure formation involved in morphogenesis
anatomical structure development
response to symbiont
biological process involved in interspecies interaction between organisms
response to stimulus
response to other organism
response to bacterium
response to symbiotic bacterium
response to external stimulus
response to external biotic stimulus
response to biotic stimulus
nodulation
developmental process
anatomical structure morphogenesis
anatomical structure formation involved in morphogenesis
anatomical structure development
response to symbiont
biological process involved in interspecies interaction between organisms
response to stimulus
response to other organism
response to bacterium
response to symbiotic bacterium
response to external stimulus
response to external biotic stimulus
response to biotic stimulus
immune response
defense response
defense response to symbiont
immune system process
defense response to other organism
response to stress
innate immune response
protein phosphorylation
protein autophosphorylation
phosphorylation
cellular metabolic process
primary metabolic process
macromolecule modification
phosphate-containing compound metabolic process
metabolic process
cellular process
protein metabolic process
macromolecule metabolic process
protein modification process
phosphorus metabolic process
Less
cell periphery
plasma membrane
membrane
cellular anatomical entity
membrane-bounded organelle
intracellular anatomical structure
membrane-enclosed lumen
vacuolar lumen
vacuole
intracellular membrane-bounded organelle
intracellular organelle lumen
intracellular organelle
organelle lumen
organelle
cell periphery
plasma membrane
membrane
cellular anatomical entity
membrane-bounded organelle
intracellular anatomical structure
membrane-enclosed lumen
vacuolar lumen
vacuole
intracellular membrane-bounded organelle
intracellular organelle lumen
intracellular organelle
organelle lumen
organelle
cytoplasm
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR044812
LysM domain receptor kinase CERK1/LYK3-like
Family
A
IPR017441
Protein kinase, ATP binding site
Binding Site
A
IPR011009
Protein kinase-like domain superfamily
Homologous Superfamily
A
IPR000719
Protein kinase domain
Domain
A
IPR001245
Serine-threonine/tyrosine-protein kinase, catalytic domain
Domain
A
IPR018392
LysM domain
Domain
A
IPR008271
Serine/threonine-protein kinase, active site
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