Crystal structure of murine norovirus P domain in complex with Nanobody NB-5853
External Resource: Annotation
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
A | d6xw6a1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
A | d6xw6a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
B | d6xw6b1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
B | d6xw6b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
C [auth D] | d6xw6d1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
C [auth D] | d6xw6d3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
C [auth D] | d6xw6d2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
D [auth C] | d6xw6c1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
D [auth C] | d6xw6c3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
D [auth C] | d6xw6c2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | Calici_coat_C_C | e6xw6A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Calici_coat_C_C | ECOD (1.6) |
B | Calici_coat_C_C | e6xw6B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Calici_coat_C_C | ECOD (1.6) |
C [auth D] | V-set_12 | e6xw6D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D [auth C] | V-set_12 | e6xw6C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|
C [auth D], D [auth C] | Heavy Chain | IGHV1 | - | capsid protein | SAbDab (2024-08-23) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| Capsid protein | - | - | |
C [auth D], D [auth C] | Nanobody NB-5853 | - | - | - |