6XJ5

Carboxypeptidase G2 modified with a versatile bioconjugate for metalloprotein design

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Bacterial exopeptidase dimerisation domain	8035516	3001194	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Zn-dependent exopeptidases	8032203	3000662	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	M20_dimer	e6xj5A2	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
A	Peptidase_M28	e6xj5A1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)
C	M20_dimer	e6xj5C1	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
C	Peptidase_M28	e6xj5C2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)
E	M20_dimer	e6xj5E1	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
E	Peptidase_M28	e6xj5E2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)
G	M20_dimer	e6xj5G2	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
G	Peptidase_M28	e6xj5G1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)
B	M20_dimer	e6xj5B2	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
B	Peptidase_M28	e6xj5B1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)
D	M20_dimer	e6xj5D1	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
D	Peptidase_M28	e6xj5D2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)
F	M20_dimer	e6xj5F1	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
F	Peptidase_M28	e6xj5F2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)
H	M20_dimer	e6xj5H2	A: a+b two layers	X: Alpha-beta plaits	H: Bacterial exopeptidase dimerisation domain (From Topology)	T: Bacterial exopeptidase dimerisation domain	F: M20_dimer	ECOD (1.6)
H	Peptidase_M28	e6xj5H1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M28	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G	PF01546	Peptidase family M20/M25/M40 (Peptidase_M20)	Peptidase family M20/M25/M40	-	Family
A, C, E, G	PF07687	Peptidase dimerisation domain (M20_dimer)	Peptidase dimerisation domain	This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase ...	This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification [2]. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases.	Domain
B, D, F, H	PF01546	Peptidase family M20/M25/M40 (Peptidase_M20)	Peptidase family M20/M25/M40	-	Family
B, D, F, H	PF07687	Peptidase dimerisation domain (M20_dimer)	Peptidase dimerisation domain	This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase ...	This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification [2]. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G	Carboxypeptidase G2	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity exopeptidase activity carboxypeptidase activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
B, D, F, H	Carboxypeptidase G2	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity exopeptidase activity carboxypeptidase activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR017150	Peptidase M20, glutamate carboxypeptidase	Family
A, C, E, G	IPR002933	Peptidase M20	Family
A, C, E, G	IPR050072	Peptidase M20A family, bacterial cell wall biosynthesis	Family
A, C, E, G	IPR001261	ArgE/DapE/ACY1/CPG2/YscS, conserved site	Conserved Site
A, C, E, G	IPR036264	Bacterial exopeptidase dimerisation domain	Homologous Superfamily
A, C, E, G	IPR011650	Peptidase M20, dimerisation domain	Domain
B, D, F, H	IPR017150	Peptidase M20, glutamate carboxypeptidase	Family
B, D, F, H	IPR002933	Peptidase M20	Family
B, D, F, H	IPR050072	Peptidase M20A family, bacterial cell wall biosynthesis	Family
B, D, F, H	IPR001261	ArgE/DapE/ACY1/CPG2/YscS, conserved site	Conserved Site
B, D, F, H	IPR036264	Bacterial exopeptidase dimerisation domain	Homologous Superfamily
B, D, F, H	IPR011650	Peptidase M20, dimerisation domain	Domain