6XHQ
Crystal structure of S. aureus TarI in complex with CDP-ribitol (space group C121)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6xhqa_ | Alpha and beta proteins (a/b) | Nucleotide-diphospho-sugar transferases | Nucleotide-diphospho-sugar transferases | automated matches | automated matches | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
B | d6xhqb_ | Alpha and beta proteins (a/b) | Nucleotide-diphospho-sugar transferases | Nucleotide-diphospho-sugar transferases | automated matches | automated matches | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Cytidylytransferase | 8102900 | 4002789 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleotide-diphospho-sugar transferases | 8102901 | 3000077 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Nucleotide-diphospho-sugar transferases | 8102901 | 3000077 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IspD | e6xhqA1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: IspD | ECOD (1.6) |
B | IspD | e6xhqB1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: IspD | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01128 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR034683 | Cytidylyltransferase IspD/TarI | Family | |
IPR018294 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site | Conserved Site | |
IPR029044 | Nucleotide-diphospho-sugar transferases | Homologous Superfamily | |
IPR050088 | IspD/TarI cytidylyltransferase, baterial-type | Family | |
IPR034709 | Ribitol-5-phosphate cytidylyltransferase | Family |