6XCI
Structure of NDM-1 in complex with macrocycle inhibitor NDM1i-3D
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8097724 | 3001057 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8097724 | 3001057 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Lactamase_B | e6xciB1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
B [auth A] | Lactamase_B | e6xciA1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF00753 | Metallo-beta-lactamase superfamily (Lactamase_B) | Metallo-beta-lactamase superfamily | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A] | BlaNDM-4_1_JQ348841 | - | ||
C [auth H] | Macrocycle NDM1i-3D | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Homologous Superfamily |
A [auth B], B [auth A] | IPR001279 | Metallo-beta-lactamase | Domain |
A [auth B], B [auth A] | IPR050855 | Metallo-beta-lactamase superfamily | Family |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
C [auth H] | DCY | |
C [auth H] | DLY | |
C [auth H] | DPR | |
C [auth H] | HYP | Parent Component: PRO :  AA0030 :  4-hydroxy-L-proline MOD:00039 |
C [auth H] | LWI | Parent Component: PHE :  AA0030 |
C [auth H] | NLE | Parent Component: LEU :  AA0030 |