6X62 | pdb_00006x62

Legionella pneumophila Dot T4SS OMC

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth JK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
YC [auth BK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
YB [auth MK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
S [auth FK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
RA [auth IK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
QB [auth LK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
K [auth EK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
JA [auth HK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
IB [auth KK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
GD [auth CK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
DC [auth AK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
C [auth DK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
AA [auth GK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth GD]	MIF	e6x62GD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
XA [auth JD]	MIF	e6x62JD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
WC [auth BD]	MIF	e6x62BD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
WB [auth MD]	MIF	e6x62MD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
W [auth Fd]	MIF	e6x62Fd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
VA [auth Id]	MIF	e6x62Id1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
UC [auth Ad]	MIF	e6x62Ad1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
UB [auth Ld]	MIF	e6x62Ld1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
Q [auth FD]	MIF	e6x62FD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
PA [auth ID]	MIF	e6x62ID1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
OB [auth LD]	MIF	e6x62LD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
O [auth Ed]	MIF	e6x62Ed1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
NA [auth Hd]	MIF	e6x62Hd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
MD [auth DD]	MIF	e6x62DD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
MB [auth Kd]	MIF	e6x62Kd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
KD [auth Cd]	MIF	e6x62Cd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
I [auth ED]	MIF	e6x62ED1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
HA [auth HD]	MIF	e6x62HD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
GB [auth KD]	MIF	e6x62KD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
G [auth Dd]	CARD	e6x62Dd01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: CARD	ECOD (v295.2)
FA [auth Gd]	MIF	e6x62Gd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
ED [auth CD]	MIF	e6x62CD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
EB [auth Jd]	MIF	e6x62Jd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
CD [auth Bd]	MIF	e6x62Bd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
CC [auth Md]	MIF	e6x62Md1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
BA [auth AD]	MIF	e6x62AD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
QC [auth Z]	Mab-21	e6x62Z1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
PC [auth Y]	Mab-21	e6x62Y1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
OC [auth X]	Mab-21	e6x62X1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
NC [auth W]	Mab-21	e6x62W1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
MC [auth V]	Mab-21	e6x62V1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
LC [auth U]	Mab-21	e6x62U1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
KC [auth T]	Mab-21	e6x62T1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
JC [auth S]	Mab-21	e6x62S1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
IC [auth R]	Mab-21	e6x62R1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
HC [auth Q]	Mab-21	e6x62Q1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
GC [auth P]	Mab-21	e6x62P1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
FC [auth O]	Mab-21	e6x62O1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
EC [auth N]	Mab-21	e6x62N1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
ZA [auth JK]	Mab-21	e6x62JK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
YC [auth BK]	Mab-21	e6x62BK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
YB [auth MK]	Mab-21	e6x62MK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
S [auth FK]	Mab-21	e6x62FK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
RA [auth IK]	Mab-21	e6x62IK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
QB [auth LK]	Mab-21	e6x62LK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
K [auth EK]	Mab-21	e6x62EK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
JA [auth HK]	Mab-21	e6x62HK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
IB [auth KK]	Mab-21	e6x62KK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
GD [auth CK]	Mab-21	e6x62CK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
DC [auth AK]	Mab-21	e6x62AK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
C [auth DK]	Mab-21	e6x62DK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)
AA [auth GK]	Mab-21	e6x62GK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Mab-21	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], FA [auth Gd], G [auth Dd], GB [auth KD], HA [auth HD], I [auth ED], KD [auth Cd], MB [auth Kd], MD [auth DD], NA [auth Hd], O [auth Ed], OB [auth LD], PA [auth ID], Q [auth FD], UB [auth Ld], UC [auth Ad], VA [auth Id], W [auth Fd], WB [auth MD], WC [auth BD], XA [auth JD], Y [auth GD]	DotD	-	-	-
AB [auth JX], AC [auth MY], AD [auth BY], BB [auth JY], BC [auth MZ], AB [auth JX], AC [auth MY], AD [auth BY], BB [auth JY], BC [auth MZ], BD [auth BZ], CA [auth GX], D [auth DX], DA [auth GY], DB [auth JZ], E [auth DY], EA [auth GZ], EC [auth N], F [auth DZ], FC [auth O], GC [auth P], HC [auth Q], HD [auth CX], IC [auth R], ID [auth CY], JB [auth KX], JC [auth S], JD [auth CZ], KA [auth HX], KB [auth KY], KC [auth T], L [auth EX], LA [auth HY], LB [auth KZ], LC [auth U], M [auth EY], MA [auth HZ], MC [auth V], N [auth EZ], NC [auth W], OC [auth X], PC [auth Y], QC [auth Z], RB [auth LX], RC [auth AX], SA [auth IX], SB [auth LY], SC [auth AY], T [auth FX], TA [auth IY], TB [auth LZ], TC [auth AZ], U [auth FY], UA [auth IZ], V [auth FZ], ZB [auth MX], ZC [auth BX]	Type IV secretion system unknown protein fragment	-	-	-
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	Inner membrane lipoprotein YiaD	-	-	cellular anatomical structure membrane
B [auth DH], CB [auth AH], FD [auth CH], HB [auth KH], IA [auth HH], B [auth DH], CB [auth AH], FD [auth CH], HB [auth KH], IA [auth HH], J [auth EH], PB [auth LH], QA [auth IH], R [auth FH], XB [auth MH], XC [auth BH], YA [auth JH], Z [auth GH]	Type IV secretion protein IcmK	-	-	-
A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], LD [auth DC], NB [auth LC], OA [auth IC], P [auth FC], VB [auth MC], VC [auth BC], WA [auth JC], X [auth GC]	DotC	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], FA [auth Gd], G [auth Dd], GB [auth KD], HA [auth HD], I [auth ED], KD [auth Cd], MB [auth Kd], MD [auth DD], NA [auth Hd], O [auth Ed], OB [auth LD], PA [auth ID], Q [auth FD], UB [auth Ld], UC [auth Ad], VA [auth Id], W [auth Fd], WB [auth MD], WC [auth BD], XA [auth JD], Y [auth GD]	IPR038140	DotD superfamily	Homologous Superfamily
BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], FA [auth Gd], G [auth Dd], GB [auth KD], HA [auth HD], I [auth ED], KD [auth Cd], MB [auth Kd], MD [auth DD], NA [auth Hd], O [auth Ed], OB [auth LD], PA [auth ID], Q [auth FD], UB [auth Ld], UC [auth Ad], VA [auth Id], W [auth Fd], WB [auth MD], WC [auth BD], XA [auth JD], Y [auth GD]	IPR031817	DotD protein	Family
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	IPR006665	OmpA-like domain	Domain
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], LD [auth DC], NB [auth LC], OA [auth IC], P [auth FC], VB [auth MC], VC [auth BC], WA [auth JC], X [auth GC]	IPR031618	Putative type IV secretory system protein	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AC], AA [auth GK], BA [auth AD], C [auth DK], CC [auth Md] A [auth AC], AA [auth GK], BA [auth AD], C [auth DK], CC [auth Md], CD [auth Bd], DC [auth AK], DD [auth CC], EB [auth Jd], ED [auth CD], FA [auth Gd], FB [auth KC], G [auth Dd], GA [auth HC], GB [auth KD], GD [auth CK], H [auth EC], HA [auth HD], I [auth ED], IB [auth KK], JA [auth HK], K [auth EK], KD [auth Cd], LD [auth DC], MB [auth Kd], MD [auth DD], NA [auth Hd], NB [auth LC], O [auth Ed], OA [auth IC], OB [auth LD], P [auth FC], PA [auth ID], Q [auth FD], QB [auth LK], RA [auth IK], S [auth FK], UB [auth Ld], UC [auth Ad], VA [auth Id], VB [auth MC], VC [auth BC], W [auth Fd], WA [auth JC], WB [auth MD], WC [auth BD], X [auth GC], XA [auth JD], Y [auth GD], YB [auth MK], YC [auth BK], ZA [auth JK]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	Dot T4SS OMC type IV secretion system

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.