6X0A
X-ray structure of a chimeric ParDE toxin-antitoxin complex from Mesorhizobium opportunistum
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05016 | e6x0aA1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
B | PF05016 | e6x0aB1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
C | PF05016 | e6x0aC1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
D | PF05016 | e6x0aD1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
E | PF05016 | e6x0aE1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
F | PF05016 | e6x0aF1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
G | PF05016 | e6x0aG1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
H | PF05016 | e6x0aH1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
I | PF05016 | e6x0aI1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
J | PF05016 | e6x0aJ1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
K | PF05016 | e6x0aK1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
L | PF05016 | e6x0aL1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
M | PF05016 | e6x0aM1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
N | PF05016 | e6x0aN1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
O | PF05016 | e6x0aO1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
P | PF05016 | e6x0aP1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
Q | PF05016 | e6x0aQ1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
R | PF05016 | e6x0aR1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF05016 | ECOD (1.6) |
AA [auth i] | PF03693 | e6x0ai1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
BA [auth j] | PF03693 | e6x0aj1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
CA [auth k] | PF03693 | e6x0ak1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
DA [auth l] | PF03693 | e6x0al1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
EA [auth m] | PF03693 | e6x0am1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
FA [auth n] | PF03693 | e6x0an1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
GA [auth o] | PF03693 | e6x0ao1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
HA [auth p] | PF03693 | e6x0ap1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
IA [auth q] | PF03693 | e6x0aq1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
JA [auth r] | PF03693 | e6x0ar1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
S [auth a] | PF03693 | e6x0aa1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
T [auth b] | PF03693 | e6x0ab1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
U [auth c] | PF03693 | e6x0ac1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
V [auth d] | PF03693 | e6x0ad1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
W [auth e] | PF03693 | e6x0ae1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
X [auth f] | PF03693 | e6x0af1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
Y [auth g] | PF03693 | e6x0ag1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
Z [auth h] | PF03693 | e6x0ah1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF03693 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03693 | Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH (ParD_antitoxin) | Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH | ParD is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is ParE in, Pfam:PF05016. The family contains several related antitoxins from Cyanobacteria, Proteobacteria and Actinobacteria. Antitoxins of this class carry an N-ter ... | Domain | |
PF05016 | ParE toxin of type II toxin-antitoxin system, parDE (ParE_toxin) | ParE toxin of type II toxin-antitoxin system, parDE | ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralised by the antitoxin ParD. The family also encompasses RelE/ParE described in [2]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007712 | Toxin-antitoxin system, RelE/ParE toxin family | Family | |
IPR051803 | Type II TA system RelE-like toxin | Family | |
IPR035093 | Toxin-antitoxin system, RelE/ParE toxin domain superfamily | Homologous Superfamily | |
IPR022789 | Antitoxin ParD | Family | |
IPR038296 | Antitoxin ParD superfamily | Homologous Superfamily | |
IPR010985 | Ribbon-helix-helix | Homologous Superfamily | |
IPR022789 | Antitoxin ParD | Family | |
IPR038296 | Antitoxin ParD superfamily | Homologous Superfamily | |
IPR010985 | Ribbon-helix-helix | Homologous Superfamily |