6WW4

Crystal structure of HERC2 ZZ domain in complex with histone H3 tail

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	ZZ	e6ww4B1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: ZZ	ECOD (1.6)
B [auth A]	ZZ	e6ww4A1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: ZZ	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF00569	Zinc finger, ZZ type (ZZ)	Zinc finger, ZZ type	Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Histone H3.1,E3 ubiquitin-protein ligase HERC2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity SUMO binding protein binding binding ubiquitin-like protein binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA binding organic cyclic compound binding nucleic acid binding cell adhesion molecule binding cadherin binding protein heterodimerization activity protein dimerization activity structural molecule activity structural constituent of chromatin	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation protein ubiquitination macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process protein localization cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization intracellular protein transport DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA repair protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular component organization or biogenesis nucleosome assembly nucleosome organization biosynthetic process cellular biosynthetic process cellular metabolic process gene expression macromolecule biosynthetic process organelle organization telomere organization chromosome organization regulation of cellular process regulation of biosynthetic process regulation of biological process epigenetic regulation of gene expression biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of metabolic process	membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen extracellular region extracellular exosome extracellular vesicle extracellular organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex protein-DNA complex nucleosome chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR037976	HERC2, APC10 domain	Domain
A [auth B], B [auth A]	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
A [auth B], B [auth A]	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR006624	Beta-propeller repeat TECPR	Repeat
A [auth B], B [auth A]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A [auth B], B [auth A]	IPR010606	Mib-herc2	Domain
A [auth B], B [auth A]	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR035983	HECT, E3 ligase catalytic domain	Homologous Superfamily
A [auth B], B [auth A]	IPR051210	Ubiquitin ligases and GEF domain-containing protein	Family
A [auth B], B [auth A]	IPR000433	Zinc finger, ZZ-type	Domain
A [auth B], B [auth A]	IPR036400	Cytochrome b5-like heme/steroid binding domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR000569	HECT domain	Domain
A [auth B], B [auth A]	IPR037252	Mib/herc2 domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
A [auth B], B [auth A]	IPR041987	HERC2, zinc finger, ZZ-type	Domain
A [auth B], B [auth A]	IPR004939	APC10/DOC domain	Domain
A [auth B], B [auth A]	IPR021097	CPH domain	Domain
A [auth B], B [auth A]	IPR001199	Cytochrome b5-like heme/steroid binding domain	Domain
A [auth B], B [auth A]	IPR009072	Histone-fold	Homologous Superfamily
A [auth B], B [auth A]	IPR007125	Histone H2A/H2B/H3	Domain
A [auth B], B [auth A]	IPR000164	Histone H3/CENP-A	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth A]	Pharos: P68431	developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis breast carcinoma Pick disease schizophrenia autosomal recessive non-syndromic intellectual disability corneal disease glioblastoma osteosarcoma lung carcinoma glioblastoma glioma large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma allergic rhinitis ovarian cancer autism spectrum disorder psoriasis cutaneous lupus erythematosus tuberculosis ependymoma gastric carcinoma Glioma of Brain, Familial hypertensive disorder lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm osteoarthritis astrocytoma (excluding glioblastoma) pancreatic intraductal papillary-mucinous carcinoma breast cancer spina bifida cystic fibrosis exocrine pancreatic carcinoma glioma susceptibility 1 invasive ductal breast carcinoma lung cancer malignant glioma medulloblastoma osteosarcoma atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous neoplasm breast carcinoma subependymoma ductal breast carcinoma in situ gastric cancer hepatocellular carcinoma