Structure of AvaR1 bound to DNA half-site
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| J [auth H] | Ldh_1_C | e6wpaH1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
| I [auth G] | Ldh_1_C | e6wpaG1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
| H [auth F] | Ldh_1_C | e6wpaF1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
| G [auth E] | Ldh_1_C | e6wpaE1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
| F [auth D] | Ldh_1_C | e6wpaD1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
| E [auth C] | Ldh_1_C | e6wpaC1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
| B | Ldh_1_C | e6wpaB1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
| A | Ldh_1_C | e6wpaA1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ldh_1_C | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00440 | Bacterial regulatory proteins, tetR family (TetR_N) | Bacterial regulatory proteins, tetR family | Domain | ||
| PF21935 | Tetracyclin repressor-like, C-terminal domain (TetR_C_45) | Tetracyclin repressor-like, C-terminal domain | This domain is found at the C-terminal end of CprB from Streptomyces coelicolor (Swiss:O66122) and similar bacterial transcriptional regulators. This region is the ligand-binding domain (LBD) [1,2]. It is often found associated with Pfam:PF00440. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth M], D [auth N] | PAL2-1-5'-GC | - | - | - |
| AvaR1 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR023772 | DNA-binding HTH domain, TetR-type, conserved site | Conserved Site | |
| IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
| IPR047923 | A-factor receptor protein-like | Family | |
| IPR054126 | CprB tetracyclin repressor-like, C-terminal domain | Domain | |
| IPR001647 | DNA-binding HTH domain, TetR-type | Domain | |
| IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | Homologous Superfamily |
