6WJ6
Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Photosystem II antenna protein-like | 8098281 | 4002735 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Photosystem II antenna protein-like | 8098282 | 3001674 | SCOP2 (2022-06-29) |
J [auth L] | SCOP2 Family | PsbL-like | 8099537 | 4002634 | SCOP2 (2022-06-29) |
J [auth L] | SCOP2 Superfamily | Photosystem II reaction center protein L, PsbL | 8099538 | 3001523 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Bacterial photosystem II reaction centre, L and M subunits | 8098521 | 4002035 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8098522 | 3000736 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Family | PsbM-like | 8101578 | 4002664 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Superfamily | Photosystem II reaction center protein M, PsbM | 8101579 | 3001573 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Photosystem II antenna protein-like | 8098321 | 4002735 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Photosystem II antenna protein-like | 8098322 | 3001674 | SCOP2 (2022-06-29) |
D | SCOP2 Family | Bacterial photosystem II reaction centre, L and M subunits | 8098319 | 4002035 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8098320 | 3000736 | SCOP2 (2022-06-29) |
E | SCOP2 Family | Cytochrome b559 subunits | 8098315 | 4002681 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Cytochrome b559 subunits | 8098316 | 3001602 | SCOP2 (2022-06-29) |
F | SCOP2 Family | Cytochrome b559 subunits | 8098317 | 4002681 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Cytochrome b559 subunits | 8098318 | 3001602 | SCOP2 (2022-06-29) |
G [auth H] | SCOP2 Family | PsbH-like | 8098515 | 4002649 | SCOP2 (2022-06-29) |
G [auth H] | SCOP2 Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098516 | 3001547 | SCOP2 (2022-06-29) |
H [auth I] | SCOP2 Family | PsbI-like | 8099533 | 4002676 | SCOP2 (2022-06-29) |
H [auth I] | SCOP2 Superfamily | Photosystem II reaction center protein I, PsbI | 8099534 | 3001590 | SCOP2 (2022-06-29) |
I [auth K] | SCOP2 Family | PsbK-like | 8098519 | 4002673 | SCOP2 (2022-06-29) |
I [auth K] | SCOP2 Superfamily | Photosystem II reaction center protein K, PsbK | 8098520 | 3001585 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PSII_1st | e6wj6B2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PSII_1st | ECOD (1.6) |
B | PSII_2nd | e6wj6B1 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PSII_2nd | ECOD (1.6) |
J [auth L] | PsbL | e6wj6L1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PsbL | ECOD (1.6) |
A | Photo_RC | e6wj6A1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
K [auth M] | PsbM | e6wj6M1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: PsbM | ECOD (1.6) |
L [auth T] | UNK_F_TYPE | e6wj6T1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: UNK_F_TYPE | ECOD (1.6) |
M [auth X] | PsbX | e6wj6X1 | A: extended segments | X: Photosystem II PsbX protein (From Topology) | H: Photosystem II PsbX protein (From Topology) | T: Photosystem II PsbX protein | F: PsbX | ECOD (1.6) |
C | PSII_1st | e6wj6C1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PSII_1st | ECOD (1.6) |
D | Photo_RC | e6wj6D1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
E | Cytochrom_B559a | e6wj6E1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: Cytochrom_B559a | ECOD (1.6) |
F | Cytochrom_B559 | e6wj6F1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: Cytochrom_B559 | ECOD (1.6) |
G [auth H] | PsbH | e6wj6H1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PsbH | ECOD (1.6) |
H [auth I] | PsbI | e6wj6I1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PsbI | ECOD (1.6) |
I [auth K] | PsbK | e6wj6K1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PsbK | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family | |
M [auth X] | PF06596 | Photosystem II reaction centre X protein (PsbX) (PsbX) | Photosystem II reaction centre X protein (PsbX) | - | Family |
PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family | |
PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family | |
PF00284 | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a) | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | - | Family | |
G [auth H] | PF00737 | Photosystem II 10 kDa phosphoprotein (PsbH) | Photosystem II 10 kDa phosphoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem II |