6W2T

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-06-29)
J [auth M]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
J [auth M]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyTranslational machinery components8097832 3000571 SCOP2B (2022-06-29)
N [auth X]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
Q [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053150 3000068 SCOP2B (2022-06-29)
S [auth f]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8052792 3001397 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2022-06-29)
V [auth L]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
W [auth N]SCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
Y [auth R]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
AA [auth T]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
BA [auth U]SCOP2B SuperfamilyWinged helix DNA-binding domain8089322 3000034 SCOP2B (2022-06-29)
CA [auth V]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
DA [auth i]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
EA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
FA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)
IA [auth 3]SCOP2B SuperfamilyTPR-like8091484 3001345 SCOP2B (2022-06-29)
IA [auth 3]SCOP2B SuperfamilyWinged helix DNA-binding domain8091488 3000034 SCOP2B (2022-06-29)
JA [auth 4]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like8053239 3002167 SCOP2B (2022-06-29)
JA [auth 4]SCOP2B SuperfamilyJAB1/MPN domain-like8053240 3001105 SCOP2B (2022-06-29)
OA [auth 2]SCOP2B SuperfamilyTPR-like8093045 3001345 SCOP2B (2022-06-29)
OA [auth 2]SCOP2B SuperfamilyWinged helix DNA-binding domain8093052 3000034 SCOP2B (2022-06-29)
PA [auth 9]SCOP2B SuperfamilyRestriction endonuclease-like8103698 3000104 SCOP2B (2022-06-29)
QA [auth 5]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like8053287 3002167 SCOP2B (2022-06-29)
QA [auth 5]SCOP2B SuperfamilyJAB1/MPN domain-like8053286 3001105 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyNucleic acid-binding proteins8052746 3000135 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052745 3001473 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052747 3000334 SCOP2B (2022-06-29)
H [auth J]SCOP2B Superfamily50S Ribosomal protein L14-like8053075 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF01015e6w2tC2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
CPF01015e6w2tC1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
G [auth I]PF01251e6w2tI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
J [auth M]PF00366,PF16205e6w2tM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
K [auth O]PF08069e6w2tO1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
K [auth O]PF00312e6w2tO2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
L [auth P]PF00411e6w2tP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
M [auth W]PF01249e6w2tW1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
N [auth X]PF00410e6w2tX2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
N [auth X]PF00410e6w2tX1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
O [auth Y]PF00164e6w2tY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
P [auth Z]PF01282e6w2tZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
Q [auth b]PF01283e6w2tb1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
R [auth c]PF01667e6w2tc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
S [auth f]PF04758e6w2tf1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
BPF00318e6w2tB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
T [auth E]PF00189e6w2tE1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
T [auth E]PF07650e6w2tE2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
U [auth G]PF00177e6w2tG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
V [auth L]PF03501e6w2tL1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
W [auth N]PF01248e6w2tN1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
X [auth Q]PF00203e6w2tQ1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
Y [auth R]PF00380e6w2tR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
Z [auth S]PF00833e6w2tS1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
AA [auth T]PF00416e6w2tT1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
BA [auth U]PF01090e6w2tU1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
CA [auth V]PF00338e6w2tV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
DA [auth i]PF03297e6w2ti1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
EA [auth d]PF01200e6w2td1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
FA [auth e]PF00253e6w2te1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
GA [auth g]PF01599e6w2tg1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
HA [auth h]PF00400e6w2th1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
IA [auth 3]PF01399e6w2t32 A: alpha arraysX: HTHH: HTHT: wingedF: PF01399ECOD (1.6)
IA [auth 3]PF09440e6w2t33 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF09440ECOD (1.6)
IA [auth 3]PF21357e6w2t31 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: PF21357ECOD (1.6)
JA [auth 4]PF01398e6w2t41 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: PF01398ECOD (1.6)
JA [auth 4]PF13012e6w2t42 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: PF13012ECOD (1.6)
KA [auth 6]PF10075e6w2t61 A: alpha arraysX: HTHH: HTHT: wingedF: PF10075ECOD (1.6)
KA [auth 6]PF10075e6w2t62 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF10075ECOD (1.6)
DPF03719e6w2tD3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
DPF00333e6w2tD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
DPF00333e6w2tD1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
OA [auth 2]PF01399e6w2t22 A: alpha arraysX: HTHH: HTHT: wingedF: PF01399ECOD (1.6)
OA [auth 2]PF05470e6w2t21 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF05470ECOD (1.6)
PA [auth 9]PF05091e6w2t91 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF05091ECOD (1.6)
QA [auth 5]PF01398,PF19445e6w2t51 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: PF01398,PF19445ECOD (1.6)
QA [auth 5]PF19445e6w2t52 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: PF19445ECOD (1.6)
E [auth F]PF00900e6w2tF1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
E [auth F]PF00467,PF16121e6w2tF3 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
E [auth F]PF00900,PF08071e6w2tF2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF08071ECOD (1.6)
F [auth H]PF01092e6w2tH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
H [auth J]PF01201e6w2tJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
I [auth K]PF00163,PF01479e6w2tK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
G [auth I]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
J [auth M]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
J [auth M]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
K [auth O]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
K [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
L [auth P]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
N [auth X]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
O [auth Y]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
P [auth Z]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
Q [auth b]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
R [auth c]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
S [auth f]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
T [auth E]PF07650KH domain (KH_2)KH domain- Domain
T [auth E]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
U [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
V [auth L]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
W [auth N]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
X [auth Q]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
Y [auth R]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
Z [auth S]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
AA [auth T]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
BA [auth U]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
CA [auth V]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
DA [auth i]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
EA [auth d]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
FA [auth e]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
GA [auth g]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
HA [auth h]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
IA [auth 3]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3.Domain
IA [auth 3]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].Domain
IA [auth 3]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
JA [auth 4]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
JA [auth 4]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
KA [auth 6]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
LA [auth 7]PF10255RNA polymerase I-associated factor PAF67 (Paf67)RNA polymerase I-associated factor PAF67- Repeat
MA [auth 8]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].Domain
MA [auth 8]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
NA [auth 1]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
OA [auth 2]PF05470Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N)Eukaryotic translation initiation factor 3 subunit 8 N-terminus- Repeat
OA [auth 2]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
PA [auth 9]PF05091Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (eIF-3_zeta)Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)- Family
QA [auth 5]PF19445C-terminal region of eIF3h (eIF3h_C)C-terminal region of eIF3h- Family
QA [auth 5]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
E [auth F]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth F]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth F]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
E [auth F]PF00467KOW motif (KOW)KOW motif- Family
F [auth H]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
I [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
I [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
eS1
G [auth I]eS7
A [auth a]18S rRNA---
J [auth M]uS17
K [auth O]uS15
L [auth P]uS11
M [auth W]eS21---
N [auth X]uS8
O [auth Y]uS12
P [auth Z]eS24
Q [auth b]eS26
R [auth c]eS27
S [auth f]eS30
uS2
T [auth E]uS3
U [auth G]uS7
V [auth L]eS10 -
W [auth N]eS12
X [auth Q]uS19
Y [auth R]uS9
Z [auth S]eS17
AA [auth T]uS13
BA [auth U]eS19
CA [auth V]uS10
DA [auth i]eS25
EA [auth d]eS28
FA [auth e]eS29
GA [auth g]eS31
HA [auth h]RACK1
IA [auth 3]Eukaryotic translation initiation factor 3 subunit E
JA [auth 4]Eukaryotic translation initiation factor 3 subunit F
KA [auth 6]Eukaryotic translation initiation factor 3 subunit K
LA [auth 7]Eukaryotic translation initiation factor 3 subunit L
MA [auth 8]Eukaryotic translation initiation factor 3 subunit M
uS5
NA [auth 1]Eukaryotic translation initiation factor 3 subunit A
OA [auth 2]Eukaryotic translation initiation factor 3 subunit C
PA [auth 9]Eukaryotic translation initiation factor 3 subunit D
QA [auth 5]Eukaryotic translation initiation factor 3 subunit H
RA [auth A]CrPV 5'-UTR IRES---
E [auth F]eS4
F [auth H]eS6
H [auth J]eS8
I [auth K]uS4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001593Small ribosomal subunit protein eS1Family
IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
G [auth I]IPR000554Small ribosomal subunit protein eS7Family
G [auth I]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
J [auth M]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
J [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth M]IPR000266Small ribosomal subunit protein uS17Family
J [auth M]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
J [auth M]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
K [auth O]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
K [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
K [auth O]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
K [auth O]IPR000589Small ribosomal subunit protein uS15Family
L [auth P]IPR001971Small ribosomal subunit protein uS11Family
L [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
L [auth P]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
N [auth X]IPR000630Small ribosomal subunit protein uS8Family
N [auth X]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
N [auth X]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
O [auth Y]IPR006032Small ribosomal subunit protein uS12Family
O [auth Y]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth Y]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
P [auth Z]IPR001976Small ribosomal subunit protein eS24Family
P [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth Z]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
Q [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
Q [auth b]IPR000892Small ribosomal subunit protein eS26Family
Q [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
R [auth c]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
R [auth c]IPR000592Small ribosomal subunit protein eS27Family
R [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
S [auth f]IPR039415Ubiquitin-like protein FUBIDomain
S [auth f]IPR019956Ubiquitin domainDomain
S [auth f]IPR019954Ubiquitin conserved siteConserved Site
S [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
S [auth f]IPR000626Ubiquitin-like domainDomain
S [auth f]IPR006846Small ribosomal subunit protein eS30Family
IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
T [auth E]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
T [auth E]IPR004044K Homology domain, type 2Domain
T [auth E]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
T [auth E]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
T [auth E]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
T [auth E]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
T [auth E]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
U [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
U [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth G]IPR000235Small ribosomal subunit protein uS7Family
U [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
U [auth G]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
V [auth L]IPR037447Small ribosomal subunit protein eS10Family
V [auth L]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth L]IPR005326Plectin/eS10, N-terminalDomain
W [auth N]IPR000530Small ribosomal subunit protein eS12Family
W [auth N]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
W [auth N]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
W [auth N]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
X [auth Q]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
X [auth Q]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
X [auth Q]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
X [auth Q]IPR002222Small ribosomal subunit protein uS19Family
Y [auth R]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Y [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth R]IPR000754Small ribosomal subunit protein uS9Family
Y [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Z [auth S]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
Z [auth S]IPR001210Small ribosomal subunit protein eS17Family
Z [auth S]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
AA [auth T]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
AA [auth T]IPR001892Small ribosomal subunit protein uS13Family
AA [auth T]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
AA [auth T]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
BA [auth U]IPR001266Small ribosomal subunit protein eS19Family
BA [auth U]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
BA [auth U]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
BA [auth U]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
CA [auth V]IPR001848Small ribosomal subunit protein uS10Family
CA [auth V]IPR027486Small ribosomal subunit protein uS10 domainDomain
CA [auth V]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
CA [auth V]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
CA [auth V]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
DA [auth i]IPR004977Small ribosomal subunit protein eS25Family
DA [auth i]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
EA [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
EA [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth d]IPR000289Small ribosomal subunit protein eS28Family
FA [auth e]IPR001209Small ribosomal subunit protein uS14Family
FA [auth e]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
FA [auth e]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
FA [auth e]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
GA [auth g]IPR019954Ubiquitin conserved siteConserved Site
GA [auth g]IPR000626Ubiquitin-like domainDomain
GA [auth g]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
GA [auth g]IPR002906Small ribosomal subunit protein eS31Domain
GA [auth g]IPR019956Ubiquitin domainDomain
GA [auth g]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth g]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth h]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth h]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth h]IPR045223Small ribosomal subunit protein RACK1-likeFamily
HA [auth h]IPR001680WD40 repeatRepeat
HA [auth h]IPR020472G-protein beta WD-40 repeatRepeat
HA [auth h]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth 3]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
IA [auth 3]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
IA [auth 3]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IA [auth 3]IPR000717Proteasome component (PCI) domainDomain
JA [auth 4]IPR027531Eukaryotic translation initiation factor 3 subunit FFamily
JA [auth 4]IPR024969EIF3F/CSN6-like, C-terminalDomain
JA [auth 4]IPR037518MPN domainDomain
JA [auth 4]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
KA [auth 6]IPR016024Armadillo-type foldHomologous Superfamily
KA [auth 6]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
KA [auth 6]IPR033464CSN8/PSMD8/EIF3KDomain
KA [auth 6]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
KA [auth 6]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
KA [auth 6]IPR000717Proteasome component (PCI) domainDomain
KA [auth 6]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
LA [auth 7]IPR000717Proteasome component (PCI) domainDomain
LA [auth 7]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
LA [auth 7]IPR019382Translation initiation factor 3 complex subunit LFamily
MA [auth 8]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
MA [auth 8]IPR000717Proteasome component (PCI) domainDomain
MA [auth 8]IPR016024Armadillo-type foldHomologous Superfamily
MA [auth 8]IPR040750eIF3 subunit M, C-terminal helix domainDomain
MA [auth 8]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
MA [auth 8]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
IPR000851Small ribosomal subunit protein uS5Family
IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
NA [auth 1]IPR027512Eukaryotic translation initiation factor 3 subunit AFamily
NA [auth 1]IPR000717Proteasome component (PCI) domainDomain
OA [auth 2]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
OA [auth 2]IPR000717Proteasome component (PCI) domainDomain
OA [auth 2]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
OA [auth 2]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
OA [auth 2]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
PA [auth 9]IPR007783Eukaryotic translation initiation factor 3 subunit DFamily
QA [auth 5]IPR037518MPN domainDomain
QA [auth 5]IPR027524Eukaryotic translation initiation factor 3 subunit HFamily
QA [auth 5]IPR045810eIF3h, C-terminalDomain
QA [auth 5]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
E [auth F]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth F]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth F]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth F]IPR002942RNA-binding S4 domainDomain
E [auth F]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth F]IPR000876Small ribosomal subunit protein eS4Family
E [auth F]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth F]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth F]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth F]IPR005824KOWDomain
F [auth H]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
F [auth H]IPR001377Small ribosomal subunit protein eS6Family
F [auth H]IPR014401Small ribosomal subunit protein eS6-likeFamily
H [auth J]IPR001047Small ribosomal subunit protein eS8Family
H [auth J]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
H [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
H [auth J]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth K]IPR002942RNA-binding S4 domainDomain
I [auth K]IPR022801Small ribosomal subunit protein uS4Family
I [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
I [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
I [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
I [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily