6VRK
Cryo-EM structure of the wild-type human serotonin transporter complexed with Br-paroxetine and 8B6 Fab
External Resource: Annotation
- Domain Annotation: ECOD Classification
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00209 | e6vrkA1 | A: alpha complex topology | X: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | T: Sodium:neurotransmitter symporter family (SNF)-like | F: PF00209 | ECOD (1.6) |
B [auth C] | PF07686 | e6vrkC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth B] | PF07686 | e6vrkB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth C] | - | L-KAPPA | - | IGKV6-17*01, IGKJ1*01, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-2B_KAPPA | IMGT (202431-0) |
C [auth B] | - | VH-CH1 | - | IGHV1-26*01, IGHJ2*01, IGHG2B*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-2B_KAPPA | IMGT (202431-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C] | Light Chain | IGKV6 | Kappa | sodium-dependent serotonin transporter | SAbDab (2024-08-09) |
C [auth B] | Heavy Chain | IGHV1 | - | sodium-dependent serotonin transporter | SAbDab (2024-08-09) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00209 | Sodium:neurotransmitter symporter family (SNF) | Sodium:neurotransmitter symporter family | - | Family | |
B [auth C] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000175 | Sodium:neurotransmitter symporter | Family | |
IPR037272 | Sodium:neurotransmitter symporter superfamily | Homologous Superfamily | |
IPR013086 | Sodium:neurotransmitter symporter, serotonin, N-terminal | Domain | |
B [auth C] | IPR003597 | Immunoglobulin C1-set | Domain |
B [auth C] | IPR050150 | Immunoglobulin Variable Light Chain | Family |
B [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth C] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth C] | IPR013106 | Immunoglobulin V-set domain | Domain |
B [auth C] | IPR003599 | Immunoglobulin domain subtype | Domain |
B [auth C] | IPR007110 | Immunoglobulin-like domain | Domain |
B [auth C] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | APC (Amino acid-Polyamine-organoCation) superfamily | Neurotransmitter: sodium symporter |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Solute Carrier (SLC) Transporter Superfamily | Serotonin transporter (SERT) complexed with paroxetine & 8B6 Fab |