6VQI

Mammalian V-ATPase from rat brain collar and peripheral stalks rotational state 1 (from focused refinement)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth G]SCOP2 FamilyVacuolar ATP synthase subunit C 8099587 4003895 SCOP2 (2022-06-29)
A [auth G]SCOP2 SuperfamilyVacuolar ATP synthase subunit C 8099588 3001744 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth G]V-ATPase_C_1ste6vqiG1 A: alpha bundlesX: helical bundle domain in vacuolar ATP synthase subunit C (From Topology)H: helical bundle domain in vacuolar ATP synthase subunit C (From Topology)T: helical bundle domain in vacuolar ATP synthase subunit CF: V-ATPase_C_1stECOD (1.6)
A [auth G]V-ATPase_C_3rde6vqiG3 A: a+b two layersX: Alpha-beta plaitsH: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology)T: ferredoxin-like domain in vacuolar ATP synthase subunit CF: V-ATPase_C_3rdECOD (1.6)
A [auth G]V-ATPase_C_2nde6vqiG2 A: a+b two layersX: Alpha-beta plaitsH: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology)T: ferredoxin-like domain in vacuolar ATP synthase subunit CF: V-ATPase_C_2ndECOD (1.6)
B [auth I]vATP-synt_E_Ne6vqiI1 A: extended segmentsX: Helical region in V-type proton ATPase subunit E (From Topology)H: Helical region in V-type proton ATPase subunit E (From Topology)T: Helical region in V-type proton ATPase subunit EF: vATP-synt_E_NECOD (1.6)
C [auth J]vATP-synt_E_Ne6vqiJ1 A: extended segmentsX: Helical region in V-type proton ATPase subunit E (From Topology)H: Helical region in V-type proton ATPase subunit E (From Topology)T: Helical region in V-type proton ATPase subunit EF: vATP-synt_E_NECOD (1.6)
D [auth K]vATP-synt_E_Ne6vqiK1 A: extended segmentsX: Helical region in V-type proton ATPase subunit E (From Topology)H: Helical region in V-type proton ATPase subunit E (From Topology)T: Helical region in V-type proton ATPase subunit EF: vATP-synt_E_NECOD (1.6)
E [auth M]V-ATPase_Ge6vqiM1 A: extended segmentsX: V-type proton ATPase subunit G (From Topology)H: V-type proton ATPase subunit G (From Topology)T: V-type proton ATPase subunit GF: V-ATPase_GECOD (1.6)
F [auth N]V-ATPase_Ge6vqiN1 A: extended segmentsX: V-type proton ATPase subunit G (From Topology)H: V-type proton ATPase subunit G (From Topology)T: V-type proton ATPase subunit GF: V-ATPase_GECOD (1.6)
G [auth O]V-ATPase_Ge6vqiO1 A: extended segmentsX: V-type proton ATPase subunit G (From Topology)H: V-type proton ATPase subunit G (From Topology)T: V-type proton ATPase subunit GF: V-ATPase_GECOD (1.6)
H [auth a]V_ATPase_I_2nde6vqia2 A: alpha bundlesX: helical bundle domain in vacuolar ATP synthase subunit C (From Topology)H: helical bundle domain in vacuolar ATP synthase subunit C (From Topology)T: helical bundle domain in vacuolar ATP synthase subunit CF: V_ATPase_I_2ndECOD (1.6)
H [auth a]V_ATPase_I_3rde6vqia1 A: a+b two layersX: Alpha-beta plaitsH: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology)T: ferredoxin-like domain in vacuolar ATP synthase subunit CF: V_ATPase_I_3rdECOD (1.6)
H [auth a]V_ATPase_I_1ste6vqia3 A: a+b two layersX: Alpha-beta plaitsH: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology)T: ferredoxin-like domain in vacuolar ATP synthase subunit CF: V_ATPase_I_1stECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth G]PF03223V-ATPase subunit C (V-ATPase_C)V-ATPase subunit C- Family
B [auth I],
C [auth J],
D [auth K]
PF01991ATP synthase (E/31 kDa) subunit (vATP-synt_E)ATP synthase (E/31 kDa) subunit- Family
E [auth M],
F [auth N],
G [auth O]
PF03179Vacuolar (H+)-ATPase G subunit (V-ATPase_G)Vacuolar (H+)-ATPase G subunit- Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth G]V-type proton ATPase subunit C 1
B [auth I],
C [auth J],
D [auth K]
V-type proton ATPase subunit E 1
E [auth M],
F [auth N],
G [auth O]
V-type proton ATPase subunit G
H [auth a]V-type proton ATPase 116 kDa subunit a isoform 1