6VO0
BG505 SOSIP.v5.2 in complex with rabbit Fab 43A2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
K [auth D] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
H [auth E] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | V-set | e6vo0L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E [auth J] | V-set | e6vo0J1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
I [auth K] | V-set | e6vo0K1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth H] | V-set_8 | e6vo0H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
F [auth G] | V-set_8 | e6vo0G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
J [auth I] | V-set_8 | e6vo0I1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth A] | GP120_2nd | e6vo0A3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
C [auth A] | GP120_3rd | e6vo0A2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
C [auth A] | GP120_1st | e6vo0A1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
G [auth C] | GP120_2nd | e6vo0C3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
G [auth C] | GP120_3rd | e6vo0C1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
G [auth C] | GP120_1st | e6vo0C2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
K [auth D] | GP120_2nd | e6vo0D1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
K [auth D] | GP120_3rd | e6vo0D2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
K [auth D] | GP120_1st | e6vo0D3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
D [auth B] | GP41_1st | e6vo0B1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
H [auth E] | GP41_1st | e6vo0E1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
L [auth F] | GP41_1st | e6vo0F1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth L], E [auth J], I [auth K] | Fab 43A2 | V-KAPPA | Oryctolagus cuniculus (rabbit) | IGKV1S3*02, IGKJ1-2*04 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202436-0) |
B [auth H], F [auth G], J [auth I] | Fab 43A2 | VH | Oryctolagus cuniculus (rabbit) | IGHV1S45*01, IGHJ4*01 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth L], E [auth J], I [auth K] | Light Chain | IGKV1 | Kappa | envelope glycoprotein gp120 | SAbDab (2024-09-13) |
B [auth H], F [auth G], J [auth I] | Heavy Chain | IGHV1 | - | envelope glycoprotein gp120 | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], G [auth C], K [auth D] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
D [auth B], H [auth E], L [auth F] | PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family |