6VGM
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP*
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ta1206-like | 8055757 | 3001431 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Lesion bypass DNA polymerase (Y-family), little finger domain | 8035589 | 3000579 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Lesion bypass DNA polymerase (Y-family), little finger domain | 8035589 | 3000579 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ta1206-like | 8055757 | 3001431 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IMS_HHH | e6vgmA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: IMS_HHH | ECOD (1.6) |
A | IMS_C | e6vgmA1 | A: a+b two layers | X: Reverse ferredoxin | H: Lesion bypass DNA polymerase (Y-family), little finger domain (From Topology) | T: Lesion bypass DNA polymerase (Y-family), little finger domain | F: IMS_C | ECOD (1.6) |
A | IMS | e6vgmA4 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: IMS | ECOD (1.6) |
A | IMS_1 | e6vgmA3 | A: a+b three layers | X: Hypothetical protein Ta1206-like (From Topology) | H: Hypothetical protein Ta1206-like (From Topology) | T: Hypothetical protein Ta1206-like | F: IMS_1 | ECOD (1.6) |
D | IMS_HHH | e6vgmD2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: IMS_HHH | ECOD (1.6) |
D | IMS_C | e6vgmD3 | A: a+b two layers | X: Reverse ferredoxin | H: Lesion bypass DNA polymerase (Y-family), little finger domain (From Topology) | T: Lesion bypass DNA polymerase (Y-family), little finger domain | F: IMS_C | ECOD (1.6) |
D | IMS | e6vgmD4 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: IMS | ECOD (1.6) |
D | IMS_1 | e6vgmD1 | A: a+b three layers | X: Hypothetical protein Ta1206-like (From Topology) | H: Hypothetical protein Ta1206-like (From Topology) | T: Hypothetical protein Ta1206-like | F: IMS_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00817 | impB/mucB/samB family (IMS) | impB/mucB/samB family | - | Family | |
PF11799 | impB/mucB/samB family C-terminal domain (IMS_C) | impB/mucB/samB family C-terminal domain | These proteins are involved in UV protection (Swiss). | Domain | |
PF11798 | IMS family HHH motif (IMS_HHH) | IMS family HHH motif | - | Motif | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001126 | UmuC domain | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR036775 | DNA polymerase, Y-family, little finger domain superfamily | Homologous Superfamily | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR050116 | DNA polymerase type-Y | Family | |
IPR022880 | DNA polymerase IV | Family | |
IPR017961 | DNA polymerase, Y-family, little finger domain | Domain | |
IPR024728 | DNA polymerase type-Y, HhH motif | Conserved Site |