6VFU
Crystal structure of human protocadherin 19 EC1-EC4
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Cadherin_2 | e6vfuC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cadherin_2 | ECOD (1.6) |
A [auth C] | Cadherin | e6vfuC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cadherin | ECOD (1.6) |
B [auth A] | Cadherin_2 | e6vfuA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cadherin_2 | ECOD (1.6) |
B [auth A] | Cadherin | e6vfuA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cadherin | ECOD (1.6) |
C [auth B] | Cadherin_2 | e6vfuB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cadherin_2 | ECOD (1.6) |
C [auth B] | Cadherin | e6vfuB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cadherin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 2.60.40.60 | Mainly Beta | Sandwich | Immunoglobulin-like | Cadherins | CATH (utative) |
B [auth A] | 2.60.40.60 | Mainly Beta | Sandwich | Immunoglobulin-like | Cadherins | CATH (utative) |
C [auth B] | 2.60.40.60 | Mainly Beta | Sandwich | Immunoglobulin-like | Cadherins | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth A], C [auth B] | PF00028 | Cadherin domain (Cadherin) | Cadherin domain | - | Domain |
A [auth C], B [auth A], C [auth B] | PF08266 | Cadherin-like (Cadherin_2) | Cadherin-like | This cadherin domain is usually the most N-terminal copy of the domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth C], B [auth A], C [auth B] | Protocadherin-19 |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth A], C [auth B] | IPR015919 | Cadherin-like superfamily | Homologous Superfamily |
A [auth C], B [auth A], C [auth B] | IPR020894 | Cadherin conserved site | Conserved Site |
A [auth C], B [auth A], C [auth B] | IPR050174 | Protocadherin/Cadherin-related Cell Adhesion | Family |
A [auth C], B [auth A], C [auth B] | IPR013164 | Cadherin, N-terminal | Domain |
A [auth C], B [auth A], C [auth B] | IPR002126 | Cadherin-like | Domain |