6VBI
crystal structure of PDE5 in complex with a non-competitive inhibitor
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6vbia_ | All alpha proteins | HD-domain/PDEase-like | HD-domain/PDEase-like | PDEase | cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6vbib_ | All alpha proteins | HD-domain/PDEase-like | HD-domain/PDEase-like | PDEase | cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00233 | e6vbiA1 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: PF00233 | ECOD (1.6) |
B | PF00233 | e6vbiB1 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: PF00233 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00233 | 3'5'-cyclic nucleotide phosphodiesterase (PDEase_I) | 3'5'-cyclic nucleotide phosphodiesterase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003607 | HD/PDEase domain | Domain | |
IPR002073 | 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | Domain | |
IPR036971 | 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily | Homologous Superfamily | |
IPR003018 | GAF domain | Domain | |
IPR029016 | GAF-like domain superfamily | Homologous Superfamily | |
IPR023088 | 3'5'-cyclic nucleotide phosphodiesterase | Family | |
IPR023174 | 3'5'-cyclic nucleotide phosphodiesterase, conserved site | Conserved Site |