6V8W | pdb_00006v8w

CDYL2 chromodomain in complex with a synthetic peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
YA [auth Z]	Ribosomal_L36	e6v8wZ1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
Y [auth M]	Ribosomal_L36	e6v8wM1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
WA [auth Y]	Ribosomal_L36	e6v8wY1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
W [auth L]	Ribosomal_L36	e6v8wL1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
UA [auth X]	Ribosomal_L36	e6v8wX1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
U [auth K]	Ribosomal_L36	e6v8wK1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
SA [auth W]	Ribosomal_L36	e6v8wW1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
S [auth J]	Ribosomal_L36	e6v8wJ1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
QA [auth V]	Ribosomal_L36	e6v8wV1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
Q [auth I]	Ribosomal_L36	e6v8wI1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
OA [auth U]	Ribosomal_L36	e6v8wU1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
O [auth H]	Ribosomal_L36	e6v8wH1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
MA [auth T]	Ribosomal_L36	e6v8wT1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
M [auth G]	Ribosomal_L36	e6v8wG1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
KA [auth S]	Ribosomal_L36	e6v8wS1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
K [auth F]	Ribosomal_L36	e6v8wF1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
IA [auth R]	Ribosomal_L36	e6v8wR1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
I [auth E]	Ribosomal_L36	e6v8wE1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
GA [auth Q]	Ribosomal_L36	e6v8wQ1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
G [auth D]	Ribosomal_L36	e6v8wD1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
EA [auth P]	Ribosomal_L36	e6v8wP1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
E [auth C]	Ribosomal_L36	e6v8wC1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
CA [auth O]	Ribosomal_L36	e6v8wO1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
C [auth B]	Ribosomal_L36	e6v8wB1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
AA [auth N]	Ribosomal_L36	e6v8wN1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)
A	Ribosomal_L36	e6v8wA1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: Ribosomal_L36	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	PF00385	Chromo (CHRromatin Organisation MOdifier) domain (Chromo)	Chromo (CHRromatin Organisation MOdifier) domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], FA [auth PP], H [auth DD], HA [auth QQ], J [auth EE], JA [auth RR], L [auth FF], LA [auth SS], N [auth GG], NA [auth TT], P [auth HH], PA [auth UU], R [auth II], RA [auth VV], T [auth JJ], TA [auth WW], V [auth KK], VA [auth XX], X [auth LL], XA [auth YY], Z [auth MM], ZA [auth ZZ]	IVA-PHE-ALA-PHE-5T3-SER-NH2	-	-	-
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	Chromodomain Y-like protein 2	transcription corepressor activity transcription regulator activity transcription coregulator activity histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity histone H3K27me3 reader activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR051053	Enoyl-CoA hydratase/isomerase and chromodomain-containing protein	Family
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR000953	Chromo/chromo shadow domain	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR023780	Chromo domain	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR001753	Enoyl-CoA hydratase/isomerase-like domain	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR014748	Enoyl-CoA hydratase, C-terminal	Homologous Superfamily
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	IPR023779	Chromo domain, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], WA [auth Y], Y [auth M], YA [auth Z]	: Q8N8U2	subependymal giant cell astrocytoma astrocytic tumor cancer glioblastoma large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis inflammatory bowel disease malignant ependymoma nodular sclerosis classical Hodgkin lymphoma ovarian cancer subependymal giant cell astrocytoma astrocytic tumor cancer glioblastoma large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis inflammatory bowel disease malignant ependymoma nodular sclerosis classical Hodgkin lymphoma ovarian cancer primitive neuroectodermal tumor breast carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma malignant glioma oligodendroglioma pilocytic astrocytoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], FA [auth PP], H [auth DD], HA [auth QQ], J [auth EE], JA [auth RR], L [auth FF], LA [auth SS], N [auth GG], NA [auth TT], P [auth HH], PA [auth UU], R [auth II], RA [auth VV], T [auth JJ], TA [auth WW], V [auth KK], VA [auth XX], X [auth LL], XA [auth YY], Z [auth MM], ZA [auth ZZ]	5T3	Parent Component: LYS
B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], FA [auth PP], H [auth DD], HA [auth QQ], J [auth EE], JA [auth RR], L [auth FF], LA [auth SS], N [auth GG], NA [auth TT], P [auth HH], PA [auth UU], R [auth II], RA [auth VV], T [auth JJ], TA [auth WW], V [auth KK], VA [auth XX], X [auth LL], XA [auth YY], Z [auth MM], ZA [auth ZZ]	IVA
B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], B [auth AA], BA [auth NN], D [auth BB], DA [auth OO], F [auth CC], FA [auth PP], H [auth DD], HA [auth QQ], J [auth EE], JA [auth RR], L [auth FF], LA [auth SS], N [auth GG], NA [auth TT], P [auth HH], PA [auth UU], R [auth II], RA [auth VV], T [auth JJ], TA [auth WW], V [auth KK], VA [auth XX], X [auth LL], XA [auth YY], Z [auth MM], ZA [auth ZZ]	NH2	: AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 : L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109