6UHC
CryoEM structure of human Arp2/3 complex with bound NPFs
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Actin/HSP70 | 8094240 | 4000313 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Actin-like ATPases | 8094242 | 3000092 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Actin-like ATPases | 8094241 | 3000092 | SCOP2 (2022-06-29) |
C | SCOP2 Family | WD40-repeat | 8094324 | 4002744 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | WD40 repeat-like | 8094325 | 3001694 | SCOP2 (2022-06-29) |
G | SCOP2 Family | Arp2/3 complex 16 kDa subunit ARPC5 | 8093721 | 4002906 | SCOP2 (2022-06-29) |
G | SCOP2 Superfamily | Arp2/3 complex 16 kDa subunit ARPC5 | 8093722 | 3001882 | SCOP2 (2022-06-29) |
E | SCOP2 Family | Arp2/3 complex 21 kDa subunit ARPC3 | 8093591 | 4002866 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Arp2/3 complex 21 kDa subunit ARPC3 | 8093592 | 3001830 | SCOP2 (2022-06-29) |
F | SCOP2 Family | Arp2/3 complex subunits | 8093617 | 4003389 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Arp2/3 complex subunits | 8093618 | 3000751 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Actin_1st | e6uhcA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_1st | ECOD (1.6) |
A | Actin_2nd | e6uhcA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_2nd | ECOD (1.6) |
B | Actin_1st | e6uhcB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_1st | ECOD (1.6) |
B | Actin_2nd | e6uhcB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_2nd | ECOD (1.6) |
C | ANAPC4_WD40_7 | e6uhcC1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_7 | ECOD (1.6) |
D | P34-Arc_C | e6uhcD2 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Arp2/3 complex subunits (From Topology) | T: Arp2/3 complex subunits | F: P34-Arc_C | ECOD (1.6) |
D | P34-Arc_N | e6uhcD1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Arp2/3 complex subunits (From Topology) | T: Arp2/3 complex subunits | F: P34-Arc_N | ECOD (1.6) |
G | P16-Arc | e6uhcG1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Arp2/3 complex 16 KDa subunit ARPC5 (From Topology) | T: Arp2/3 complex 16 KDa subunit ARPC5 | F: P16-Arc | ECOD (1.6) |
E | P21-Arc | e6uhcE1 | A: alpha bundles | X: Arp2/3 complex 21 kDa subunit ARPC3 (From Topology) | H: Arp2/3 complex 21 kDa subunit ARPC3 (From Topology) | T: Arp2/3 complex 21 kDa subunit ARPC3 | F: P21-Arc | ECOD (1.6) |
F | ARPC4 | e6uhcF1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Arp2/3 complex subunits (From Topology) | T: Arp2/3 complex subunits | F: ARPC4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
D | 3.30.1460.20 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (utative) |
G | 1.25.40.190 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Actin-related protein 2/3 complex subunit 5 | CATH (utative) |
E | 1.10.1760.10 | Mainly Alpha | Orthogonal Bundle | Arp2/3 complex 21 kDa subunit ARPC3 | Actin-related protein 2/3 complex subunit 3 | CATH (utative) |
F | 3.30.1460.20 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00022 | Actin (Actin) | Actin | - | Family | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF04045 | Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc) | Arp2/3 complex, 34 kD subunit p34-Arc | - | Family | |