Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth L]SCOP2B SuperfamilyHydB/Nqo4-like 8097970 3001849 SCOP2B (2022-06-29)
X [auth l]SCOP2 FamilyNqo4-like 8097969 4000433 SCOP2 (2022-06-29)
X [auth l]SCOP2 SuperfamilyHydB/Nqo4-like 8097970 3001849 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8097968 3002200 SCOP2B (2022-06-29)
O [auth b]SCOP2 FamilyMonovalent cation/H+ antiporter MBH, subunit F 8097967 4007804 SCOP2 (2022-06-29)
O [auth b]SCOP2 SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8097968 3002200 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8097962 3002200 SCOP2B (2022-06-29)
P [auth c]SCOP2 FamilyMonovalent cation/H+ antiporter MBH, subunit G 8097961 4007805 SCOP2 (2022-06-29)
P [auth c]SCOP2 SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8097962 3002200 SCOP2 (2022-06-29)
F [auth G]SCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8097964 3002200 SCOP2B (2022-06-29)
S [auth g]SCOP2 FamilyNADH-quinone oxidoreductase NDH subunit 11-like 8097963 4005793 SCOP2 (2022-06-29)
S [auth g]SCOP2 SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8097964 3002200 SCOP2 (2022-06-29)
I [auth J]SCOP2B SuperfamilyNqo6/HydA N-terminal domain-like 8097966 3002291 SCOP2B (2022-06-29)
V [auth j]SCOP2 FamilyNq06/HydA N-terminal domain-like 8097965 4007641 SCOP2 (2022-06-29)
V [auth j]SCOP2 SuperfamilyNqo6/HydA N-terminal domain-like 8097966 3002291 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth K]Complex1_30kDae6u8yK1 A: a+b two layersX: Nqo5-likeH: Nqo5-like (From Topology)T: Nqo5-likeF: Complex1_30kDaECOD (1.6)
W [auth k]Complex1_30kDae6u8yk1 A: a+b two layersX: Nqo5-likeH: Nqo5-like (From Topology)T: Nqo5-likeF: Complex1_30kDaECOD (1.6)
K [auth L]Complex1_49kDa_1ste6u8yL1 A: alpha complex topologyX: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)T: alpha-helical domain in nickel-iron hydrogenase, large subunitF: Complex1_49kDa_1stECOD (1.6)
K [auth L]NuoDe6u8yL2 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: NuoDECOD (1.6)
K [auth L]Complex1_49kDa_2nde6u8yL3 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: Complex1_49kDa_2ndECOD (1.6)
X [auth l]Complex1_49kDa_1ste6u8yl3 A: alpha complex topologyX: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)T: alpha-helical domain in nickel-iron hydrogenase, large subunitF: Complex1_49kDa_1stECOD (1.6)
X [auth l]NuoDe6u8yl2 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: NuoDECOD (1.6)
X [auth l]Complex1_49kDa_2nde6u8yl1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: Complex1_49kDa_2ndECOD (1.6)
L [auth M]NADHdhe6u8yM1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (1.6)
Y [auth m]NADHdhe6u8ym1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (1.6)
F [auth G]Oxidored_q2e6u8yG1 A: alpha complex topologyX: NADH-quinone oxidoreductase subunit K (From Topology)H: NADH-quinone oxidoreductase subunit K (From Topology)T: NADH-quinone oxidoreductase subunit KF: Oxidored_q2ECOD (1.6)
S [auth g]Oxidored_q2e6u8yg1 A: alpha complex topologyX: NADH-quinone oxidoreductase subunit K (From Topology)H: NADH-quinone oxidoreductase subunit K (From Topology)T: NADH-quinone oxidoreductase subunit KF: Oxidored_q2ECOD (1.6)
G [auth H]Proton_antipo_Me6u8yH1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
T [auth h]Proton_antipo_Me6u8yh1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
H [auth X]Proton_antipo_Me6u8yX1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
U [auth x]Proton_antipo_Me6u8yx1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
I [auth J]Oxidored_q6e6u8yJ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)
V [auth j]Oxidored_q6e6u8yj1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
N [auth a]
PF01899Na+/H+ ion antiporter subunit (MNHE)Na+/H+ ion antiporter subunit- Family
J [auth K],
W [auth k]
PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunit- Family
K [auth L],
X [auth l]
PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
L [auth M],
Y [auth m]
PF00146NADH dehydrogenase (NADHdh)NADH dehydrogenase- Family
M [auth N],
Z [auth n]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
B,
O [auth b]
PF04066Multiple resistance and pH regulation protein F (MrpF / PhaF) (MrpF_PhaF)Multiple resistance and pH regulation protein F (MrpF / PhaF)- Family
C,
P [auth c]
PF03334Na+/H+ antiporter subunit (PhaG_MnhG_YufB)Na+/H+ antiporter subunit- Family
D,
Q [auth d]
PF13244MBH, subunit D (MbhD)MBH, subunit DHydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Mem ...Hydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Membrane-anchored hydrogenase module. MbhJ, K, L, N are predicted to be exposed to the cytoplasm and form the peripheral arm. The remaining 10 subunits are predicted to be integral membrane proteins forming the membrane arm, made of 44 transmembrane helices (TMH) [2, 3]. MbhA, B, C and F form the Sodium translocation module. MbhD, E, G and H form the Proton translocation module. MbhI is the linker between the hydrogenase module and the proton-translocating membrane module. It anchors the discontinuous TMH7 of MbhH via its middle lateral helix and the C-terminal of TMH2, found in MbhE. MbhD and MbhE together are equivalent to Nqo10 of Complex I [1]. MbhD has three TM helices.
Domain
E,
R [auth e]
PF20501MBH, subunit E (MbhE)MBH, subunit EHydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Mem ...Hydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Membrane-anchored hydrogenase module. MbhJ, K, L, N are predicted to be exposed to the cytoplasm and form the peripheral arm. The remaining 10 subunits are predicted to be integral membrane proteins forming the membrane arm, made of 44 transmembrane helices (TMH) [2, 3]. MbhA, B, C and F form the Sodium translocation module. MbhD, E, G and H form the Proton translocation module. MbhI is the linker between the hydrogenase module and the proton-translocating membrane module. It anchors the discontinuous TMH7 of MbhH via its middle lateral helix and the C-terminal of TMH2, found in MbhE. MbhD and MbhE together are equivalent to Nqo10 of Complex I [1]. MbhE has two transmembrane helices: TMH1 and TMH2.
Domain
E,
R [auth e]
PF04039Domain related to MnhB subunit of Na+/H+ antiporter (MnhB)Domain related to MnhB subunit of Na+/H+ antiporter- Family
F [auth G],
S [auth g]
PF00420NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2)NADH-ubiquinone/plastoquinone oxidoreductase chain 4L- Family
G [auth H],
T [auth h]
PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
H [auth X],
U [auth x]
PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
I [auth J],
V [auth j]
PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
N [auth a]
Monovalent cation/H+ antiporter subunit E -
J [auth K],
W [auth k]
NADH dehydrogenase subunit C - -
K [auth L],
X [auth l]
NADH dehydrogenase subunit D - -
L [auth M],
Y [auth m]
NADH dehydrogenase subunit- -
M [auth N],
Z [auth n]
NADH dehydrogenase subunit I
B,
O [auth b]
Monovalent cation/H+ antiporter subunit F -
C,
P [auth c]
Monovalent cation/H+ antiporter subunit G -
D,
Q [auth d]
DUF4040 domain-containing protein- -
E,
R [auth e]
Monovalent cation/H+ antiporter subunit B- -
F [auth G],
S [auth g]
Monovalent cation/H+ antiporter subunit C- -
G [auth H],
T [auth h]
NADH dehydrogenase subunit N- -
H [auth X],
U [auth x]
NADH dehydrogenase subunit M- -
I [auth J],
V [auth j]
NADH dehydrogenase subunit B -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
N [auth a]
IPR002758Na+/H+ antiporter subunit EFamily
J [auth K],
W [auth k]
IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
J [auth K],
W [auth k]
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
K [auth L],
X [auth l]
IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
K [auth L],
X [auth l]
IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved siteConserved Site
K [auth L],
X [auth l]
IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
K [auth L],
X [auth l]
IPR001135NADH-quinone oxidoreductase, subunit DDomain
L [auth M],
Y [auth m]
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
L [auth M],
Y [auth m]
IPR052561Complex I Subunit 1Family
M [auth N],
Z [auth n]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
M [auth N],
Z [auth n]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
M [auth N],
Z [auth n]
IPR010226NADH-quinone oxidoreductase, chain IFamily
B,
O [auth b]
IPR007208Na(+)/H(+) antiporter subunit F-likeFamily
C,
P [auth c]
IPR005133Na+/H+ antiporter subunit GFamily
D,
Q [auth d]
IPR025383MrpA C-terminal/MbhDDomain
D,
Q [auth d]
IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJHomologous Superfamily
D,
Q [auth d]
IPR050622CPA3 Na(+)/H(+) Antiporter Subunit BFamily
E,
R [auth e]
IPR050622CPA3 Na(+)/H(+) Antiporter Subunit BFamily
E,
R [auth e]
IPR007182Na+/H+ antiporter MnhB subunit-related proteinDomain
E,
R [auth e]
IPR046806MrpA C-terminal/MbhEDomain
F [auth G],
S [auth g]
IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likeFamily
F [auth G],
S [auth g]
IPR050601CPA3 antiporter subunit CFamily
G [auth H],
T [auth h]
IPR050586CPA3 Na+/H+ Antiporter Subunit DFamily
G [auth H],
T [auth h]
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
H [auth X],
U [auth x]
IPR050586CPA3 Na+/H+ Antiporter Subunit DFamily
H [auth X],
U [auth x]
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
I [auth J],
V [auth j]
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
I [auth J],
V [auth j]
IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain