6U8Y
Structure of the membrane-bound sulfane sulfur reductase (MBS), an archaeal respiratory membrane complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
K [auth L] | SCOP2B Superfamily | HydB/Nqo4-like | 8097970 | 3001849 | SCOP2B (2022-06-29) |
X [auth l] | SCOP2 Family | Nqo4-like | 8097969 | 4000433 | SCOP2 (2022-06-29) |
X [auth l] | SCOP2 Superfamily | HydB/Nqo4-like | 8097970 | 3001849 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8097968 | 3002200 | SCOP2B (2022-06-29) |
O [auth b] | SCOP2 Family | Monovalent cation/H+ antiporter MBH, subunit F | 8097967 | 4007804 | SCOP2 (2022-06-29) |
O [auth b] | SCOP2 Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8097968 | 3002200 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8097962 | 3002200 | SCOP2B (2022-06-29) |
P [auth c] | SCOP2 Family | Monovalent cation/H+ antiporter MBH, subunit G | 8097961 | 4007805 | SCOP2 (2022-06-29) |
P [auth c] | SCOP2 Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8097962 | 3002200 | SCOP2 (2022-06-29) |
F [auth G] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8097964 | 3002200 | SCOP2B (2022-06-29) |
S [auth g] | SCOP2 Family | NADH-quinone oxidoreductase NDH subunit 11-like | 8097963 | 4005793 | SCOP2 (2022-06-29) |
S [auth g] | SCOP2 Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8097964 | 3002200 | SCOP2 (2022-06-29) |
I [auth J] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8097966 | 3002291 | SCOP2B (2022-06-29) |
V [auth j] | SCOP2 Family | Nq06/HydA N-terminal domain-like | 8097965 | 4007641 | SCOP2 (2022-06-29) |
V [auth j] | SCOP2 Superfamily | Nqo6/HydA N-terminal domain-like | 8097966 | 3002291 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth K] | Complex1_30kDa | e6u8yK1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
W [auth k] | Complex1_30kDa | e6u8yk1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
K [auth L] | Complex1_49kDa_1st | e6u8yL1 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
K [auth L] | NuoD | e6u8yL2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
K [auth L] | Complex1_49kDa_2nd | e6u8yL3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
X [auth l] | Complex1_49kDa_1st | e6u8yl3 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
X [auth l] | NuoD | e6u8yl2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
X [auth l] | Complex1_49kDa_2nd | e6u8yl1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
L [auth M] | NADHdh | e6u8yM1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: NADHdh | ECOD (1.6) |
Y [auth m] | NADHdh | e6u8ym1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: NADHdh | ECOD (1.6) |
F [auth G] | Oxidored_q2 | e6u8yG1 | A: alpha complex topology | X: NADH-quinone oxidoreductase subunit K (From Topology) | H: NADH-quinone oxidoreductase subunit K (From Topology) | T: NADH-quinone oxidoreductase subunit K | F: Oxidored_q2 | ECOD (1.6) |
S [auth g] | Oxidored_q2 | e6u8yg1 | A: alpha complex topology | X: NADH-quinone oxidoreductase subunit K (From Topology) | H: NADH-quinone oxidoreductase subunit K (From Topology) | T: NADH-quinone oxidoreductase subunit K | F: Oxidored_q2 | ECOD (1.6) |
G [auth H] | Proton_antipo_M | e6u8yH1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
T [auth h] | Proton_antipo_M | e6u8yh1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
H [auth X] | Proton_antipo_M | e6u8yX1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
U [auth x] | Proton_antipo_M | e6u8yx1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
I [auth J] | Oxidored_q6 | e6u8yJ1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
V [auth j] | Oxidored_q6 | e6u8yj1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, N [auth a] | PF01899 | Na+/H+ ion antiporter subunit (MNHE) | Na+/H+ ion antiporter subunit | - | Family |
J [auth K], W [auth k] | PF00329 | Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa) | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | - | Family |
K [auth L], X [auth l] | PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family |
L [auth M], Y [auth m] | PF00146 | NADH dehydrogenase (NADHdh) | NADH dehydrogenase | - | Family |
M [auth N], Z [auth n] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
B, O [auth b] | PF04066 | Multiple resistance and pH regulation protein F (MrpF / PhaF) (MrpF_PhaF) | Multiple resistance and pH regulation protein F (MrpF / PhaF) | - | Family |
C, P [auth c] | PF03334 | Na+/H+ antiporter subunit (PhaG_MnhG_YufB) | Na+/H+ antiporter subunit | - | Family |
D, Q [auth d] | PF13244 | MBH, subunit D (MbhD) | MBH, subunit D | Hydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Mem ... | Domain |
E, R [auth e] | PF20501 | MBH, subunit E (MbhE) | MBH, subunit E | Hydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Mem ... | Domain |
E, R [auth e] | PF04039 | Domain related to MnhB subunit of Na+/H+ antiporter (MnhB) | Domain related to MnhB subunit of Na+/H+ antiporter | - | Family |
F [auth G], S [auth g] | PF00420 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2) | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | - | Family |
G [auth H], T [auth h] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
H [auth X], U [auth x] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
I [auth J], V [auth j] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex I (NADH dehydrogenase) and supercomplexes | H+ or Na+ translocating NADH dehydrogenase |