6U4O
Crystal structure of recombinant class II fumarase from Schistosoma mansoni
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | d6u4oc_ | All alpha proteins | L-aspartase-like | L-aspartase-like | automated matches | automated matches | Blood fluke (Schistosoma mansoni ) [TaxId: 6183 ], | SCOPe (2.08) |
B [auth A] | d6u4oa_ | All alpha proteins | L-aspartase-like | L-aspartase-like | automated matches | automated matches | Blood fluke (Schistosoma mansoni ) [TaxId: 6183 ], | SCOPe (2.08) |
C [auth D] | d6u4od_ | All alpha proteins | L-aspartase-like | L-aspartase-like | automated matches | automated matches | Blood fluke (Schistosoma mansoni ) [TaxId: 6183 ], | SCOPe (2.08) |
D [auth B] | d6u4ob_ | All alpha proteins | L-aspartase-like | L-aspartase-like | automated matches | automated matches | Blood fluke (Schistosoma mansoni ) [TaxId: 6183 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2 Family | L-aspartase/fumarase | 8101302 | 4001433 | SCOP2 (2022-06-29) |
B [auth A] | SCOP2 Superfamily | L-aspartase-like | 8101303 | 3001572 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Lyase_1_N | e6u4oC3 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: Lyase_1_N | ECOD (1.6) |
A [auth C] | FumaraseC_C | e6u4oC2 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: FumaraseC_C | ECOD (1.6) |
A [auth C] | Lyase_1_C | e6u4oC1 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: Lyase_1_C | ECOD (1.6) |
B [auth A] | Lyase_1_N | e6u4oA2 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: Lyase_1_N | ECOD (1.6) |
B [auth A] | FumaraseC_C | e6u4oA3 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: FumaraseC_C | ECOD (1.6) |
B [auth A] | Lyase_1_C | e6u4oA1 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: Lyase_1_C | ECOD (1.6) |
C [auth D] | Lyase_1_N | e6u4oD1 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: Lyase_1_N | ECOD (1.6) |
C [auth D] | FumaraseC_C | e6u4oD3 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: FumaraseC_C | ECOD (1.6) |
C [auth D] | Lyase_1_C | e6u4oD2 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: Lyase_1_C | ECOD (1.6) |
D [auth B] | Lyase_1_N | e6u4oB3 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: Lyase_1_N | ECOD (1.6) |
D [auth B] | FumaraseC_C | e6u4oB2 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: FumaraseC_C | ECOD (1.6) |
D [auth B] | Lyase_1_C | e6u4oB1 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: Lyase_1_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth A], C [auth D], D [auth B] | PF00206 | Lyase (Lyase_1) | Lyase | - | Domain |
A [auth C], B [auth A], C [auth D], D [auth B] | PF10415 | Fumarase C C-terminus (FumaraseC_C) | Fumarase C C-terminus | Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth A], C [auth D], D [auth B] | IPR000362 | Fumarate lyase family | Family |
A [auth C], B [auth A], C [auth D], D [auth B] | IPR022761 | Fumarate lyase, N-terminal | Domain |
A [auth C], B [auth A], C [auth D], D [auth B] | IPR024083 | Fumarase/histidase, N-terminal | Homologous Superfamily |
A [auth C], B [auth A], C [auth D], D [auth B] | IPR005677 | Fumarate hydratase, class II | Family |
A [auth C], B [auth A], C [auth D], D [auth B] | IPR008948 | L-Aspartase-like | Homologous Superfamily |
A [auth C], B [auth A], C [auth D], D [auth B] | IPR018951 | Fumarase C, C-terminal | Domain |
A [auth C], B [auth A], C [auth D], D [auth B] | IPR020557 | Fumarate lyase, conserved site | Conserved Site |