E. coli 50S with phazolicin (PHZ) bound in exit tunnel
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth CC] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| C [auth CC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| D [auth CD] | SCOP2 Family | Ribosomal protein L3 | 8093451 | 4002103 | SCOP2 (2022-06-29) |
| D [auth CD] | SCOP2 Superfamily | Translational proteins | 8093452 | 3000811 | SCOP2 (2022-06-29) |
| D [auth CD] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| E [auth CE] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| F [auth CF] | SCOP2 Family | Ribosomal protein L5 | 8100893 | 4001498 | SCOP2 (2022-06-29) |
| F [auth CF] | SCOP2 Superfamily | RL5-like | 8100894 | 3001709 | SCOP2 (2022-06-29) |
| F [auth CF] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| G [auth CG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| G [auth CG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| H [auth CH] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| H [auth CH] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| I [auth CJ] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| I [auth CJ] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| J [auth CK] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| K [auth CL] | SCOP2 Family | Ribosomal protein L14 | 8096341 | 4001826 | SCOP2 (2022-06-29) |
| K [auth CL] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8096342 | 3000433 | SCOP2 (2022-06-29) |
| K [auth CL] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| L [auth CM] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| M [auth CN] | SCOP2 Family | Ribosomal protein L16p | 8097997 | 4003717 | SCOP2 (2022-06-29) |
| M [auth CN] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8097998 | 3000884 | SCOP2 (2022-06-29) |
| M [auth CN] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| N [auth CO] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| O [auth CP] | SCOP2 Family | Ribosomal protein L18p and S11 | 8097939 | 4000555 | SCOP2 (2022-06-29) |
| O [auth CP] | SCOP2 Superfamily | Translational machinery components | 8097940 | 3000571 | SCOP2 (2022-06-29) |
| O [auth CP] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| P [auth CQ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| Q [auth CR] | SCOP2 Family | Ribosomal protein L20 | 8097929 | 4001930 | SCOP2 (2022-06-29) |
| Q [auth CR] | SCOP2 Superfamily | Ribosomal protein L20 | 8097930 | 3000563 | SCOP2 (2022-06-29) |
| Q [auth CR] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| R [auth CS] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| S [auth CT] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| T [auth CU] | SCOP2 Family | L23p | 8093561 | 4000943 | SCOP2 (2022-06-29) |
| T [auth CU] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8093562 | 3000210 | SCOP2 (2022-06-29) |
| T [auth CU] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| U [auth CV] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| V [auth CW] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| W [auth CX] | SCOP2 Family | Ribosomal L27 protein | 8093453 | 4001900 | SCOP2 (2022-06-29) |
| W [auth CX] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8093454 | 3000539 | SCOP2 (2022-06-29) |
| W [auth CX] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| X [auth CY] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| Y [auth CZ] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8097647 | 4000600 | SCOP2 (2022-06-29) |
| Y [auth CZ] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8097648 | 3000713 | SCOP2 (2022-06-29) |
| Y [auth CZ] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| Z [auth C0] | SCOP2 Family | Ribosomal protein L30p/L7e | 8096085 | 4001360 | SCOP2 (2022-06-29) |
| Z [auth C0] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8096086 | 3001378 | SCOP2 (2022-06-29) |
| Z [auth C0] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| AA [auth C1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| BA [auth C2] | SCOP2 Family | Ribosomal protein L33p | 8093585 | 4000511 | SCOP2 (2022-06-29) |
| BA [auth C2] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8093586 | 3001320 | SCOP2 (2022-06-29) |
| BA [auth C2] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| DA [auth C4] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| EA [auth C5] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth CC] | Copper-bind | e6u48CC1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| D [auth CD] | Copper-bind | e6u48CD1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| E [auth CE] | Ald_deCOase | e6u48CE1 | A: beta barrels | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ald_deCOase | ECOD (v294.2) |
| F [auth CF] | Copper-bind | e6u48CF1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| G [auth CG] | Copper-bind | e6u48CG1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| H [auth CH] | Copper-bind | e6u48CH1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| I [auth CJ] | Copper-bind | e6u48CJ1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| J [auth CK] | Copper-bind | e6u48CK1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| K [auth CL] | Copper-bind | e6u48CL1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| L [auth CM] | Copper-bind | e6u48CM1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| M [auth CN] | Copper-bind | e6u48CN1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| N [auth CO] | Copper-bind | e6u48CO1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| O [auth CP] | Copper-bind | e6u48CP1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| P [auth CQ] | Copper-bind | e6u48CQ1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| Q [auth CR] | Copper-bind | e6u48CR1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| R [auth CS] | Copper-bind | e6u48CS1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| S [auth CT] | Copper-bind | e6u48CT1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| T [auth CU] | PepX_N | e6u48CU1 | A: beta barrels | X: jelly-roll | H: DUF1107-like | T: DUF1107-like | F: PepX_N | ECOD (v294.2) |
| U [auth CV] | Copper-bind | e6u48CV1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| V [auth CW] | Copper-bind | e6u48CW1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| W [auth CX] | Copper-bind | e6u48CX1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| X [auth CY] | Copper-bind | e6u48CY1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| Y [auth CZ] | Copper-bind | e6u48CZ1 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| Z [auth C0] | Copper-bind | e6u48C01 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| AA [auth C1] | Copper-bind | e6u48C11 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| BA [auth C2] | Copper-bind | e6u48C21 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| CA [auth C3] | Copper-bind | e6u48C31 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| DA [auth C4] | Copper-bind | e6u48C41 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
| EA [auth C5] | Copper-bind | e6u48C51 | A: beta barrels | X: HAD domain-like | H: Hemagglutinin HA2 chain | T: Hemagglutinin HA2 chain | F: Copper-bind | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth CC] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| C [auth CC] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| D [auth CD] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| E [auth CE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| F [auth CF] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| F [auth CF] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| G [auth CG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| H [auth CH] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| H [auth CH] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| I [auth CJ] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| I [auth CJ] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| J [auth CK] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| K [auth CL] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| L [auth CM] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| M [auth CN] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| N [auth CO] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| O [auth CP] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| P [auth CQ] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| Q [auth CR] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| R [auth CS] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| S [auth CT] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| T [auth CU] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| U [auth CV] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| U [auth CV] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| V [auth CW] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| W [auth CX] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| X [auth CY] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| Y [auth CZ] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| Z [auth C0] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| AA [auth C1] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| BA [auth C2] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| CA [auth C3] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| DA [auth C4] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| EA [auth C5] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| A [auth CA] | 1MG | Parent Component: G |
| A [auth CA] | 2MA | Parent Component: A |
| A [auth CA] | 2MG | Parent Component: G |
| A [auth CA] | 3TD | Parent Component: U |
| A [auth CA] | 5MC | Parent Component: C |
| A [auth CA] | 5MU | Parent Component: U |
| A [auth CA] | 6MZ | Parent Component: A |
| A [auth CA] | G7M | Parent Component: G |
| A [auth CA] | H2U | Parent Component: U |
| A [auth CA] | OMC | Parent Component: C |
| A [auth CA] | OMG | Parent Component: G |
| A [auth CA] | OMU | Parent Component: U |
| A [auth CA] | PSU | Parent Component: U |
| D [auth CD] | MEQ | Parent Component: GLN :  AA0071 :  N5-methyl-L-glutamine MOD:00080 |
| M [auth CN] | 4D4 | Parent Component: ARG :  AA0071 |
| FA [auth A] | A0G | :  AA0071 |
| FA [auth A] | BB9 | Parent Component: CYS :  AA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 :  N5-methyl-L-glutamine MOD:00080 , glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 |














