6U48
E. coli 50S with phazolicin (PHZ) bound in exit tunnel
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth CC] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2021-05-27) |
C [auth CC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2021-05-27) |
D [auth CD] | SCOP2 Family | Ribosomal protein L3 | 8093451 | 4002103 | SCOP2 (2021-05-27) |
D [auth CD] | SCOP2 Superfamily | Translational proteins | 8093452 | 3000811 | SCOP2 (2021-05-27) |
D [auth CD] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2021-05-27) |
F [auth CF] | SCOP2 Family | Ribosomal protein L5 | 8100893 | 4001498 | SCOP2 (2021-05-27) |
F [auth CF] | SCOP2 Superfamily | RL5-like | 8100894 | 3001709 | SCOP2 (2021-05-27) |
F [auth CF] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2021-05-27) |
G [auth CG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2021-05-27) |
G [auth CG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2021-05-27) |
I [auth CJ] | SCOP2B Superfamily | Ribosomal protein L11 C-terminal domain | 8032961 | 3001186 | SCOP2B (2021-05-27) |
I [auth CJ] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2021-05-27) |
J [auth CK] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2021-05-27) |
L [auth CM] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2021-05-27) |
M [auth CN] | SCOP2 Family | Ribosomal protein L16p | 8097997 | 4003717 | SCOP2 (2021-05-27) |
M [auth CN] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8097998 | 3000884 | SCOP2 (2021-05-27) |
M [auth CN] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2021-05-27) |
O [auth CP] | SCOP2 Family | Ribosomal protein L18p and S11 | 8097939 | 4000555 | SCOP2 (2021-05-27) |
O [auth CP] | SCOP2 Superfamily | Translational machinery components | 8097940 | 3000571 | SCOP2 (2021-05-27) |
O [auth CP] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2021-05-27) |
P [auth CQ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2021-05-27) |
Q [auth CR] | SCOP2 Family | Ribosomal protein L20 | 8097929 | 4001930 | SCOP2 (2021-05-27) |
Q [auth CR] | SCOP2 Superfamily | Ribosomal protein L20 | 8097930 | 3000563 | SCOP2 (2021-05-27) |
Q [auth CR] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2021-05-27) |
R [auth CS] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2021-05-27) |
T [auth CU] | SCOP2 Family | L23p | 8093561 | 4000943 | SCOP2 (2021-05-27) |
T [auth CU] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8093562 | 3000210 | SCOP2 (2021-05-27) |
T [auth CU] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8035415 | 3000210 | SCOP2B (2021-05-27) |
U [auth CV] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2021-05-27) |
X [auth CY] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2021-05-27) |
BA [auth C2] | SCOP2 Family | Ribosomal protein L33p | 8093585 | 4000511 | SCOP2 (2021-05-27) |
BA [auth C2] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8093586 | 3001320 | SCOP2 (2021-05-27) |
BA [auth C2] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2021-05-27) |
DA [auth C4] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2021-05-27) |
EA [auth C5] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2021-05-27) |
K [auth CL] | SCOP2 Family | Ribosomal protein L14 | 8096341 | 4001826 | SCOP2 (2021-05-27) |
K [auth CL] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8096342 | 3000433 | SCOP2 (2021-05-27) |
K [auth CL] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8098412 | 3000433 | SCOP2B (2021-05-27) |
N [auth CO] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2021-05-27) |
S [auth CT] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2021-05-27) |
V [auth CW] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2021-05-27) |
W [auth CX] | SCOP2 Family | Ribosomal L27 protein | 8093453 | 4001900 | SCOP2 (2021-05-27) |
W [auth CX] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8093454 | 3000539 | SCOP2 (2021-05-27) |
W [auth CX] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2021-05-27) |
Y [auth CZ] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8097647 | 4000600 | SCOP2 (2021-05-27) |
Y [auth CZ] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8097648 | 3000713 | SCOP2 (2021-05-27) |
Y [auth CZ] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2021-05-27) |
Z [auth C0] | SCOP2 Family | Ribosomal protein L30p/L7e | 8096085 | 4001360 | SCOP2 (2021-05-27) |
Z [auth C0] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8096086 | 3001378 | SCOP2 (2021-05-27) |
Z [auth C0] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2021-05-27) |
AA [auth C1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2021-05-27) |
E [auth CE] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2021-05-27) |
H [auth CH] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2021-05-27) |
H [auth CH] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth CC] | PF00181 | e6u48CC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
C [auth CC] | PF03947 | e6u48CC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
D [auth CD] | PF00297 | e6u48CD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
F [auth CF] | PF00281,PF00673 | e6u48CF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
G [auth CG] | PF00347 | e6u48CG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
I [auth CJ] | PF00298 | e6u48CJ2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
I [auth CJ] | PF03946 | e6u48CJ1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
J [auth CK] | PF00572 | e6u48CK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
L [auth CM] | PF00828 | e6u48CM1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
M [auth CN] | PF00252 | e6u48CN1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
O [auth CP] | PF00861 | e6u48CP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
P [auth CQ] | PF01245 | e6u48CQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
Q [auth CR] | PF00453 | e6u48CR1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
R [auth CS] | PF00829 | e6u48CS1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
T [auth CU] | PF00276 | e6u48CU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
U [auth CV] | PF00467,PF17136 | e6u48CV1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
X [auth CY] | PF00830 | e6u48CY1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
BA [auth C2] | PF00471 | e6u48C21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
CA [auth C3] | PF00468 | e6u48C31 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
DA [auth C4] | PF01632 | e6u48C41 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
EA [auth C5] | PF00444 | e6u48C51 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
K [auth CL] | PF00238 | e6u48CL1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
N [auth CO] | PF01196 | e6u48CO1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
S [auth CT] | PF00237 | e6u48CT1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
V [auth CW] | PF01386 | e6u48CW1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
W [auth CX] | PF01016 | e6u48CX1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
Y [auth CZ] | PF00831 | e6u48CZ1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
Z [auth C0] | PF00327 | e6u48C01 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
AA [auth C1] | PF01783 | e6u48C11 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
E [auth CE] | PF00573 | e6u48CE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
H [auth CH] | PF01281 | e6u48CH2 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
H [auth CH] | PF03948 | e6u48CH1 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: PF03948 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth CA] | 1MG | Parent Component: G |
A [auth CA] | 2MA | Parent Component: A |
A [auth CA] | 2MG | Parent Component: G |
A [auth CA] | 3TD | Parent Component: U |
A [auth CA] | 5MC | Parent Component: C |
A [auth CA] | 5MU | Parent Component: U |
A [auth CA] | 6MZ | Parent Component: A |
A [auth CA] | G7M | Parent Component: G |
A [auth CA] | H2U | Parent Component: U |
A [auth CA] | OMC | Parent Component: C |
A [auth CA] | OMG | Parent Component: G |
A [auth CA] | OMU | Parent Component: U |
A [auth CA] | PSU | Parent Component: U |
D [auth CD] | MEQ | Parent Component: GLN :  AA0071 :  N5-methyl-L-glutamine MOD:00080 |
M [auth CN] | 4D4 | Parent Component: ARG :  AA0071 |
FA [auth A] | A0G | AA0071 | : 
FA [auth A] | BB9 | Parent Component: CYS :  AA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 :  N5-methyl-L-glutamine MOD:00080 , glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 |