6U3W
Crystal structure of yeast alpha/epsilon-COP of the COPI vesicular coat
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | COPI_C | e6u3wA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Coatomer subunit alpha C-terminal domain (From Topology) | T: Coatomer subunit alpha C-terminal domain | F: COPI_C | ECOD (1.6) |
A | COPI_C_1 | e6u3wA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: COPI_C_1 | ECOD (1.6) |
B | Coatomer_E | e6u3wB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Coatomer_E | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06957 | Coatomer (COPI) alpha subunit C-terminus (COPI_C) | Coatomer (COPI) alpha subunit C-terminus | - | Repeat | |
PF04733 | Coatomer epsilon subunit (Coatomer_E) | Coatomer epsilon subunit | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR011044 | Quinoprotein amine dehydrogenase, beta chain-like | Homologous Superfamily | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR016391 | Coatomer subunit alpha | Family | |
IPR006692 | Coatomer, WD associated region | Domain | |
IPR050844 | Coatomer complex subunit | Family | |
IPR010714 | Coatomer, alpha subunit, C-terminal | Domain | |
IPR001680 | WD40 repeat | Repeat | |
IPR047312 | Coatomer subunit alpha, WD Associated Region | Domain | |
IPR020472 | G-protein beta WD-40 repeat | Repeat | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR006822 | Coatomer, epsilon subunit | Family | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |