6TQN
rrn anti-termination complex without S4
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth T] | SCOP2B Superfamily | Carbohydrate phosphatase-like | 8066099 | 3001721 | SCOP2B (2022-06-29) |
B [auth S] | SCOP2B Superfamily | Carbohydrate phosphatase-like | 8066099 | 3001721 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Rad51 N-terminal domain-like | 8040765 | 3000529 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | NusB-like | 8038005 | 3000679 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8080349 | 3000334 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | N-utilization substance G protein NusG, N-terminal domain | 8080353 | 3000474 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8037279 | 3001500 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | C-terminal domain of RNA polymerase alpha subunit | 8042964 | 3000519 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8037279 | 3001500 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth T] | Inositol_P_N | e6tqnT2 | A: a+b two layers | X: a+b domain in carbohydrate phosphatases (From Topology) | H: a+b domain in carbohydrate phosphatases (From Topology) | T: a+b domain in carbohydrate phosphatases | F: Inositol_P_N | ECOD (1.6) |
A [auth T] | Inositol_P_C | e6tqnT1 | A: a/b three-layered sandwiches | X: Rossmann-like domain in carbohydrate phosphatases (From Homology) | H: Rossmann-like domain in carbohydrate phosphatases | T: Rossmann-like domain in carbohydrate phosphatases | F: Inositol_P_C | ECOD (1.6) |
K [auth Y] | RNA_pol_Rpb1_2 | e6tqnY3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RNA_pol_Rpb1_2 | ECOD (1.6) |
K [auth Y] | PRK00566_2nd | e6tqnY2 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: PRK00566_2nd | ECOD (1.6) |
K [auth Y] | PRK14844 | e6tqnY8 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK14844 | ECOD (1.6) |
K [auth Y] | RNA_pol_Rpb1_5_1st | e6tqnY7 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb1_5_1st | ECOD (1.6) |
K [auth Y] | PRK00566_3rd,RNA_pol_Rpb1_5_3rd | e6tqnY9 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK00566_3rd,RNA_pol_Rpb1_5_3rd | ECOD (1.6) |
K [auth Y] | RNA_pol_Rpb1_1 | e6tqnY6 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_1 | ECOD (1.6) |
K [auth Y] | RNA_pol_Rpb1_5_3rd | e6tqnY1 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_5_3rd | ECOD (1.6) |
K [auth Y] | RNA_pol_Rpb1_4 | e6tqnY5 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_4 | ECOD (1.6) |
K [auth Y] | RNA_pol_Rpb1_3 | e6tqnY4 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_3 | ECOD (1.6) |
B [auth S] | Inositol_P_N | e6tqnS2 | A: a+b two layers | X: a+b domain in carbohydrate phosphatases (From Topology) | H: a+b domain in carbohydrate phosphatases (From Topology) | T: a+b domain in carbohydrate phosphatases | F: Inositol_P_N | ECOD (1.6) |
B [auth S] | Inositol_P_C | e6tqnS1 | A: a/b three-layered sandwiches | X: Rossmann-like domain in carbohydrate phosphatases (From Homology) | H: Rossmann-like domain in carbohydrate phosphatases | T: Rossmann-like domain in carbohydrate phosphatases | F: Inositol_P_C | ECOD (1.6) |
C [auth A] | S1_3 | e6tqnA3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_3 | ECOD (1.6) |
C [auth A] | HHH_5 | e6tqnA4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
C [auth A] | KH_5 | e6tqnA1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_5 | ECOD (1.6) |
C [auth A] | nusA | e6tqnA5 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: nusA | ECOD (1.6) |
C [auth A] | NusA_N | e6tqnA2 | A: a+b complex topology | X: Transcription factor NusA, N-terminal domain (From Topology) | H: Transcription factor NusA, N-terminal domain (From Topology) | T: Transcription factor NusA, N-terminal domain | F: NusA_N | ECOD (1.6) |
D [auth B] | NusB | e6tqnB1 | A: alpha complex topology | X: NusB-like (From Topology) | H: NusB-like (From Topology) | T: NusB-like | F: NusB | ECOD (1.6) |
E | Ribosomal_S10 | e6tqnE1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
F [auth G] | KOW | e6tqnG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: KOW | ECOD (1.6) |
F [auth G] | NusG | e6tqnG2 | A: a+b two layers | X: Alpha-beta plaits | H: N-utilization substance G protein NusG, N-terminal domain (From Topology) | T: N-utilization substance G protein NusG, N-terminal domain | F: NusG | ECOD (1.6) |
G [auth U] | RNA_pol_A_CTD | e6tqnU3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: RNA_pol_A_CTD | ECOD (1.6) |
G [auth U] | RNA_pol_L | e6tqnU2 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: RNA_pol_L | ECOD (1.6) |
G [auth U] | RNA_pol_A_bac | e6tqnU1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: RNA_pol_A_bac | ECOD (1.6) |
H [auth V] | RNA_pol_L | e6tqnV1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: RNA_pol_L | ECOD (1.6) |
H [auth V] | RNA_pol_A_bac | e6tqnV2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: RNA_pol_A_bac | ECOD (1.6) |
I [auth W] | RNA_pol_Rpb6 | e6tqnW1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RNA polymerase omega subunit | F: RNA_pol_Rpb6 | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_6_3rd | e6tqnX9 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RNA_pol_Rpb2_6_3rd | ECOD (1.6) |
J [auth X] | PRK09603 | e6tqnX8 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: PRK09603 | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_6_2nd | e6tqnX5 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb2_6_2nd | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_6_1st | e6tqnX6 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb2_6_1st | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_6_2nd_2 | e6tqnX7 | A: a+b complex topology | X: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology) | H: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology) | T: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | F: RNA_pol_Rpb2_6_2nd_2 | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_3 | e6tqnX10 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_3 | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_1 | e6tqnX4 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_1 | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_45 | e6tqnX3 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_45 | ECOD (1.6) |
J [auth X] | RNA_pol_Rpb2_7 | e6tqnX1 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_7 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth T] | PF00459 | Inositol monophosphatase family (Inositol_P) | Inositol monophosphatase family | - | Family |
K [auth Y] | PF00623 | RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) | RNA polymerase Rpb1, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ... | Domain |
K [auth Y] | PF05000 | RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) | RNA polymerase Rpb1, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ... | Domain |
K [auth Y] | PF04983 | RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) | RNA polymerase Rpb1, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ... | Domain |
K [auth Y] | PF04998 | RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) | RNA polymerase Rpb1, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ... | Domain |
B [auth S] | PF00459 | Inositol monophosphatase family (Inositol_P) | Inositol monophosphatase family | - | Family |
C [auth A] | PF13184 | NusA-like KH domain (KH_5) | NusA-like KH domain | - | Domain |
C [auth A] | PF08529 | NusA N-terminal domain (NusA_N) | NusA N-terminal domain | This domain represents the RNA polymerase binding domain of NusA. | Domain |
C [auth A] | PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain |
C [auth A] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
D [auth B] | PF01029 | NusB family (NusB) | NusB family | The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. | Domain |
PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain | |
F [auth G] | PF02357 | Transcription termination factor nusG (NusG) | Transcription termination factor nusG | - | Domain |
F [auth G] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
G [auth U], H [auth V] | PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
G [auth U], H [auth V] | PF01000 | RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) | RNA polymerase Rpb3/RpoA insert domain | Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal | Domain |
G [auth U], H [auth V] | PF03118 | Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) | Bacterial RNA polymerase, alpha chain C terminal domain | The alpha subunit of RNA polymerase consists of two independently folded domains, referred to as amino-terminal and carboxyl terminal domains. The amino terminal domain is involved in the interaction with the other subunits of the RNA polymerase. T ... | Domain |
I [auth W] | PF01192 | RNA polymerase Rpb6 (RNA_pol_Rpb6) | RNA polymerase Rpb6 | - | Family |
J [auth X] | PF04561 | RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) | RNA polymerase Rpb2, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ... | Domain |
J [auth X] | PF10385 | RNA polymerase beta subunit external 1 domain (RNA_pol_Rpb2_45) | RNA polymerase beta subunit external 1 domain | RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between ... | Domain |
J [auth X] | PF04560 | RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7) | RNA polymerase Rpb2, domain 7 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ... | Domain |
J [auth X] | PF04565 | RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) | RNA polymerase Rpb2, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ... | Domain |
J [auth X] | PF04563 | RNA polymerase beta subunit (RNA_pol_Rpb2_1) | RNA polymerase beta subunit | - | Family |
J [auth X] | PF00562 | RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) | RNA polymerase Rpb2, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ... | Domain |