6SXA
XPF-ERCC1 Cryo-EM Structure, Apo-form
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth F] | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8036445 | 3000163 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8036446 | 3000163 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | Restriction endonuclease-like | 8036551 | 3000104 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth G] | HHH_2_1 | e6sxaG2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_2_1 | ECOD (1.6) |
B [auth G] | Rad10 | e6sxaG1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Rad10 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth G] | 3.40.50.10130 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) | |
B [auth G] | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth F] | PF02732 | ERCC4 domain (ERCC4) | ERCC4 domain | This domain is a family of nucleases. The family includes EME1 which is an essential component of a Holliday junction resolvase [2-3]. EME1 interacts with MUS81 to form a DNA structure-specific endonuclease. | Domain |
B [auth G] | PF00633 | Helix-hairpin-helix motif (HHH) | Helix-hairpin-helix motif | - | Motif |
B [auth G] | PF03834 | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) (Rad10) | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth F] | IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily |
A [auth F] | IPR006167 | DNA repair protein XPF | Family |
A [auth F] | IPR010994 | RuvA domain 2-like | Homologous Superfamily |
A [auth F] | IPR006166 | ERCC4 domain | Domain |
A [auth F] | IPR047520 | DNA repair endonuclease XPF, nuclease domain | Domain |
B [auth G] | IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily |
B [auth G] | IPR010994 | RuvA domain 2-like | Homologous Superfamily |
B [auth G] | IPR004579 | ERCC1/RAD10/SWI10 family | Family |
B [auth G] | IPR047260 | ERCC1-like, central domain | Domain |