6SJ5
Crystal structure of the uL14-RsfS complex from Staphylococcus aureus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6sj5a_ | Alpha and beta proteins (a+b) | Nucleotidyltransferase | Nucleotidyltransferase | Iojap/YbeB-like | automated matches | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
B | d6sj5b_ | Alpha and beta proteins (a+b) | Nucleotidyltransferase | Nucleotidyltransferase | Iojap/YbeB-like | automated matches | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Iojap/YbeB-like | 8094846 | 4001878 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Nucleotidyltransferase-like | 8094847 | 3000129 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Nucleotidyltransferase-like | 8094847 | 3000129 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8093892 | 3000433 | SCOP2B (2021-05-27) |
D | SCOP2 Family | Ribosomal protein L14 | 8093891 | 4001826 | SCOP2 (2021-05-27) |
D | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8093892 | 3000433 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02410 | e6sj5A1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: PF02410 | ECOD (1.6) |
B | PF02410 | e6sj5B1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: PF02410 | ECOD (1.6) |
C | PF00238 | e6sj5C1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
D | PF00238 | e6sj5D1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (utative) |
B | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (utative) |
C | 2.40.150.20 | Mainly Beta | Beta Barrel | Ribosomal Protein L14 | Ribosomal protein L14/L23 | CATH (utative) |
D | 2.40.150.20 | Mainly Beta | Beta Barrel | Ribosomal Protein L14 | Ribosomal protein L14/L23 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02410 | Ribosomal silencing factor during starvation (RsfS) | Ribosomal silencing factor during starvation | - | Family | |
PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043519 | Nucleotidyltransferase superfamily | Homologous Superfamily | |
IPR004394 | Protein Iojap/ribosomal silencing factor RsfS | Family | |
IPR005745 | Large ribosomal subunit protein uL14, bacterial-type | Family | |
IPR036853 | Large ribosomal subunit protein uL14 superfamily | Homologous Superfamily | |
IPR000218 | Large ribosomal subunit protein uL14 | Family | |
IPR019972 | Large ribosomal subunit protein uL14, conserved site | Conserved Site |