6S2E
Cryo-EM structure of Ctf18-1-8 in complex with the catalytic domain of DNA polymerase epsilon
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1798 | e6s2eA4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: KOG1798 | ECOD (1.6) |
A | POLBc_epsilon_2nd | e6s2eA3 | A: alpha bundles | X: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: thumb domain in bacteriophage RB69-like DNA polymerase I | F: POLBc_epsilon_2nd | ECOD (1.6) |
A | DNA_pol_B_1st | e6s2eA1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_B_1st | ECOD (1.6) |
A | DNA_pol_B_exo1_1st | e6s2eA5 | A: a+b two layers | X: Alpha-beta plaits | H: Family B DNA polymerase insertion domain (From Topology) | T: Family B DNA polymerase insertion domain | F: DNA_pol_B_exo1_1st | ECOD (1.6) |
A | DNA_pol_B_exo1_3rd | e6s2eA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_pol_B_exo1_3rd | ECOD (1.6) |
B [auth D] | Ctf8 | e6s2eD1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: Ctf8 | ECOD (1.6) |
D [auth B] | Dcc1_1st | e6s2eB1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: Dcc1_1st | ECOD (1.6) |
D [auth B] | Dcc1_3rd | e6s2eB5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_3rd | ECOD (1.6) |
D [auth B] | Dcc1_4th | e6s2eB4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_4th | ECOD (1.6) |
D [auth B] | Dcc1_2nd | e6s2eB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_2nd | ECOD (1.6) |
D [auth B] | Dcc1_5th | e6s2eB3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_5th | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22634 | DNA polymerase epsilon catalytic subunit A, thumb domain (POL2_thumb) | DNA polymerase epsilon catalytic subunit A, thumb domain | This entry represents the thumb domain of DNA polymerase epsilon catalytic subunit A from Saccharomyces cerevisiae (POL2), the catalytic component of this complex involved in chromosomal DNA replication. This domain, which makes contacts in the DNA m ... | Domain | |
B [auth D] | PF09696 | Ctf8 (Ctf8) | Ctf8 | - | Family |
D [auth B] | PF09724 | Sister chromatid cohesion protein Dcc1 (Dcc1) | Sister chromatid cohesion protein Dcc1 | - | Family |