6RG0
Structure of pdxj
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6rg0a_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Pyridoxine 5'-phosphate synthase | Pyridoxine 5'-phosphate synthase | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
C | d6rg0c_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Pyridoxine 5'-phosphate synthase | Pyridoxine 5'-phosphate synthase | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
D | d6rg0d_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Pyridoxine 5'-phosphate synthase | Pyridoxine 5'-phosphate synthase | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B | d6rg0b_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Pyridoxine 5'-phosphate synthase | Pyridoxine 5'-phosphate synthase | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Pyridoxine 5'-phosphate synthase | 8032714 | 3000586 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Pyridoxine 5'-phosphate synthase | 8032714 | 3000586 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Pyridoxine 5'-phosphate synthase | 8032714 | 3000586 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Pyridoxine 5'-phosphate synthase | 8032714 | 3000586 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PdxJ | e6rg0A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PdxJ | ECOD (1.6) |
C | PdxJ | e6rg0C1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PdxJ | ECOD (1.6) |
D | PdxJ | e6rg0D1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PdxJ | ECOD (1.6) |
B | PdxJ | e6rg0B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PdxJ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
C | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
D | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
B | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03740 | Pyridoxal phosphate biosynthesis protein PdxJ (PdxJ) | Pyridoxal phosphate biosynthesis protein PdxJ | Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synt ... | Domain |